External Email - Use Caution Good afternoon FreeSurfer experts,
Hope that everyone is well and staying safe! I tried opening LGI freeview (or tksurferfv) output, and I have been running into the following issues (see code and error message outputs below). Any ideas how I could fix this? Please let me know if additional details are needed. Bolded code is what I inserted. Outputs are not bolded. *tksurfer HAR30303_srs2_2 lh inflated -overlay lh.pial_lgi* zsh: command not found: tksurfer *tksurferfv HAR30303_srs2_2 lh inflated -overlay lh.pial_lgi* ERROR: cannot find lh.pial_lgi *cd $SUBJECTS_DIR/HAR30303_srs2_2/surf* *tksurferfv HAR30303_srs2_2 lh inflated -overlay lh.pial_lgi* freeview -f /Applications/ace_complete/HAR30303_srs2_2/surf/lh.inflated:curvature=/Applications/ace_complete/HAR30303_srs2_2/surf/lh.curv:overlay=lh.pial_lgi:overlay_threshold=2,2,5 -viewport 3d /Applications/freesurfer/bin/fsvglrun: line 20: conditional binary operator expected /Applications/freesurfer/bin/fsvglrun: line 20: syntax error near `FS_ALLOW_VGLRUN' /Applications/freesurfer/bin/fsvglrun: line 20: `if [[ ! -v FS_ALLOW_VGLRUN ]]; then' Also within the surf folder, I tried something like: *freesurfer -v lh.pial_lgi* Output in freeview was just a dark screen - tried changing the color map but nothing improved this issue. Thank you so much!
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