Hello Freesurfers,
I have 6 runs of DTI data per subject in a sample of 50, and I want to unpack
the dicoms, so it outputs the bval bvec values, to use in dt_recon.
I realized I can use either dcm2nii or mri_convert to do this.
Could you please let me know what the command should be? and also should I do
it separately for each run? subject’s scan info is attached.
I used the below command in dev environment but didn’t get any bval bvec values.
mri_convert /${subj}/IMAGES/IM01113 /${subj}/DTI/IM_13.nii
Appreciate your help.
Mona
1 Localizer ok 512 512 13 1 IM00269
2 SagT2FLAIRSPACE ok 512 512 176 1 IM00273
3 SagT2FLAIRSPACE ok 512 512 171 1 IM02084
4 SagT1MPRAGE1mmiso_P3 ok 256 256 176 1 IM00449
5 SagT2FLAIRSPACE ok 512 512 227 1 IM02311
6 SagT1MPRAGE1mmiso_P3 ok 256 256 171 1 IM02482
7 SagT1MPRAGE1mmiso_P3 ok 256 256 239 1 IM02721
8 AxWaveSWI ok 288 252 88 1 IM00793
9 AxWaveSWI ok 288 252 88 1 IM00881
10 AxWaveSWI ok 288 252 81 1 IM00705
11 AxWaveSWI ok 288 252 88 1 IM00969
12 Diffusion ok 990 990 1 70 IM00970
13 Diffusion ok 110 110 74 1 IM01113
14 Diffusion ok 110 110 74 1 IM01187
15 Diffusion ok 110 110 74 1 IM01261
16 Diffusion ok 110 110 74 1 IM01335
17 Diffusion ok 110 110 1 74 IM01336
Zahra (Mona) Nasiriavanaki, M.D.
Postdoctoral Research Fellow
Department of Psychiatry | MGH/HMS
149 13th Street, 149-2615
Boston, MA, USA, 02129
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