External Email - Use Caution Dear Eugenio,
Thank you. I've uploaded via FTP a zip file (g1120_5.zip) containing a recon-all folder of a subject, including thalamic nuclei segmentation. Best, Marco Il giorno lun 30 ago 2021 alle ore 10:17 Marco Aiello < marcoaiello1...@gmail.com> ha scritto: > Dear Freesurfer experts, > > I'm running (FS 7.1.1) segmentThalamicNuclei.sh on T1 scan from recon-all. > On a sample of about 100 subjects I've found an average volume of 250 mm^3 > and 290 mm^3 for LGN-left and LGN-right, respectively. Consistent with > literature, I would expect an LGN volume around the order of 100 mm^3. Do > you have any suggestions to address this issue? > > Best, > > Marco > > An example of left thalamic nuclei stats on a subject: > > # Left Thalamic nuclei volume statistics as created by > segmentThalamicNuclei.sh > 1 1 0 179.160119 AV > 2 2 0 89.639229 CeM > 3 3 0 40.504433 CL > 4 4 0 298.704524 CM > 5 5 0 29.204221 LD > 6 6 0 323.610060 LGN > 7 7 0 172.804240 LP > 8 8 0 16.699212 L-Sg > 9 9 0 370.292762 MDl > 10 10 0 1028.359432 MDm > 11 11 0 99.816768 MGN > 12 12 0 16.307111 MV(Re) > 13 13 0 4.583480 Pc > 14 14 0 46.055844 Pf > 15 15 0 8.414055 Pt > 16 16 0 274.769665 PuA > 17 17 0 276.059756 PuI > 18 18 0 197.470981 PuL > 19 19 0 1329.257389 PuM > 20 20 0 540.769724 VA > 21 21 0 48.461021 VAmc > 22 22 0 879.500725 VLa > 23 23 0 1143.223136 VLp > 24 24 0 33.606403 VM > 25 25 0 1224.126516 VPL > 26 26 0 8671.400807 Whole_thalamus > > > -- ------------------------- Marco Aiello, PhD *Researcher* *IRCCS SDN | Synlab* Via Gianturco 113 / Via Brin 55, Naples, IT phone (0039) 0812408299 marco.aie...@synlab.it _______________
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