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Hi all,
Just a follow-up to report how to fix this issue.
1. I uninstalled my 7.2.0 tar installation
2. Updated my system using:
* sudo apt-get update && sudo apt-get upgrade && sudo apt-get
dist-upgrade
sudo apt-get install -f
3. Installed xorg-dev following the isntructions from
https://secure-web.cisco.com/1uyxJZhlPnPOIdA9nned9bq583KtYUcWz7KlVedz6uYOyn6vSVW5tygAWrdinPxsDoDzp8UEdJDRPaBtNhy8mzJ0GheEYiKH3BW5trqBwwOZ9N2u4DlUTyARL5ZfdofvF0z4GuZh_TKWP3L3rWMfsaYkrAkNEnYkggaqmNm9HczuCH4hwBt54nDSgWVbrWcTjCQl1dZfuKvQ60CuTOwbBZCHy1fkXiFtrHpr14mSCINzAFrs71YHmP4vG-tApSdSZEG-iRnkGkdP8iopbvCjMIg/https%3A%2F%2Fzoomadmin.com%2FHowToInstall%2FUbuntuPackage%2Fxorg-dev
* sudo apt-get update -y
sudo apt-get install -y xorg-dev
4. Reinstalled 7.2.0 following the instructions from fsbuild using the
freesurfer_7.2.0_amd64.deb file.
This seems to have fixed the issue. I can now run FS binaries like mri_vol2vol
and mri_aparc2aseg.
Best,
Luis
________________________________
From: Alvarado,Luis R <luis.alvar...@louisville.edu>
Sent: Tuesday, November 2, 2021 3:23 PM
To: fsbuild <fsbu...@contbay.com>; freesurfer@nmr.mgh.harvard.edu
<freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Problem with FS 7.1.2 binaries: libcrypt.so.1:
version `XCRYPT_2.0' not found
Thank you for the fast response.
I had a typo in my original message. when I said 7.1.2, I really meant 7.2. I
originally installed it using the freesurfer-linux-ubuntu18_amd64-7.2.0.tar.gz
archive file. The issue with the binaries was with 7.2.0.
I uninstalled that version and I am trying to re-install it using the .deb file.
I am getting the following error message while trying to install
freesurfer_7.2.0_amd64.deb as suggested:
$ sudo apt-get install ./freesurfer_7.2.0_amd64.deb
Reading package lists... Done
Building dependency tree
Reading state information... Done
Note, selecting 'freesurfer' instead of './freesurfer_7.2.0_amd64.deb'
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:
The following packages have unmet dependencies:
freesurfer : Depends: xorg-dev but it is not going to be installed
E: Unable to correct problems, you have held broken packages.
any thoughts?
--Luis
From: fsbuild <fsbu...@contbay.com>
Date: Tuesday, November 2, 2021 at 7:01 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Cc: "Alvarado,Luis R" <luis.alvar...@louisville.edu>
Subject: Re: [Freesurfer] Problem with FS 7.1.2 binaries: libcrypt.so.1:
version `XCRYPT_2.0' not found
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Hello Luis,
This looks like an issue reported after people upgraded their Ubuntu systems
causing the linker to find the wrong version of that library, e.g.,
https://secure-web.cisco.com/1EZOGxul5QsqH8V1OvHrGjhJ1TC_KmqqItKcdZhnvo3hTas0biEL7hVower8OQWE1Xg68GBFp_0vXoWuREkq88ZIwpXciC9fyqEBtVWOl49LiVJfeFCuXCrjh2U0h3dSNNwpUMYtU6KpN-jLpr0PSNAmcwQMetUFFVaq5ofyw58h011Fqt_EibbXg4htw4xBXK_WYpxwMsU-W66xnggwY2FKI-oPfIplwU4kawLHnjIC4ZES0wtdmBg7TCd5nzTnTZk_xfG0kanA1EyUJaqBADw/https%3A%2F%2Fubuntuforums.org%2Fshowthread.php%3Ft%3D2438576<https://secure-web.cisco.com/14OjrgUIXo4QO-8nDwO7pl3oHnOz71mlpCVpyMkug7wKOxiYCvIs5MVrGp0KbSNKible_Kizwj4hGAJGl1n2kw-8G9AT9Sql-jjXzZTdfRoxY2f7CWkaD38ev9InfOKHg6b-ePgCwCZ5pxnReDaavC_GOpgjAMDbQL7ntpsGPeGqmkZejrpQZLkLcIZND0QT2NyUNplOWYsrj7z8fdpLVy8F3MJxsUIM5OrjUYLBBInmqIjxHwo4_mOgN5cBI9ttPEB7mzXO0sM9S5Rz__BkmrA/https%3A%2F%2Fnam11.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fubuntuforums.org%252Fshowthread.php%253Ft%253D2438576%26data%3D04%257C01%257Cluis.alvarado%2540louisville.edu%257C06d42e638ce84c7b2d6608d99defed1c%257Cdd246e4a54344e158ae391ad9797b209%257C0%257C0%257C637714476671012879%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C0%26sdata%3DTZw%252F3YPeAU4%252BpnOCvOTSjTNfdwRoKv2ELZ6cvhCYFKw%253D%26reserved%3D0>
https://secure-web.cisco.com/1kFLw4bcEefcsQsueFByPn1Wq7qidxVkPcwljveeILKLPMdCUXr8tGHp71qUYm1fmDqFJdb3b8u3T-7xiVbQ4Gn1p33PX5WwTsbOxiQm-XA-SHsBQ1DCiuhFyvOG9q1EMQApicmTgakFZiHe4un2u287aHFIG2b8SXFWbjU2RRuVK49WX3tYluN9QG0PWy28yYmm6b7DEKEfypAx0YzBEyDyaIGMVE8KEm5oP4hCgmbJyAHFNDQrakz7fd71XoxG-Gfmu-CHkp5bBc-gNlcr_AQ/https%3A%2F%2Fgithub.com%2Fpmq20%2Fruby-packer%2Fissues%2F131<https://secure-web.cisco.com/13oaiA8W17nqHS09_mGAHdN53Qo-78Htz3KgGaWXDqRfWIn6BUDJ9ESCc5YINudF_GILFbIdbTUpNg1QVJ7IT8JZKlGlMy3iZ-TNx2hy_K95D80NlJ1MBKutXFdTez7IUfCqggT8ykcnj2M8SegfHozcpyqMvUUGCY5SYg24zKT6iJfASjzea3bGF15GCvkJKvI1Gf55MKiY9ODh2imCSY5bo9xibKUFDppks_AbzcCXDuFvKXRRzTrUooY00jtkyuNzW6h2S-C1x8Q4gO7fH-Q/https%3A%2F%2Fnam11.safelinks.protection.outlook.com%2F%3Furl%3Dhttps%253A%252F%252Fgithub.com%252Fpmq20%252Fruby-packer%252Fissues%252F131%26data%3D04%257C01%257Cluis.alvarado%2540louisville.edu%257C06d42e638ce84c7b2d6608d99defed1c%257Cdd246e4a54344e158ae391ad9797b209%257C0%257C0%257C637714476671022833%257CUnknown%257CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%253D%257C0%26sdata%3DpboxJFLmhGT81%252FAE8uKBc%252BxhqxcgwUTM8AykIEy8KZo%253D%26reserved%3D0>
As of the 7.2.0 release, there is a .deb installer package you can use if you
have admin/root privileges. If there is an issue with the wrong version of
libraries on your system, running the installer might update them.
$ wget
https://secure-web.cisco.com/1qQn_kJ3gfRIMA7OtJsh5FIUo2k360Sik17NG33XQViZh4y9U-BjHRjbAjRWUQtdHbnrJeUwZbd2-UZwbinObQhnIG7Iqyk4g1HVjrh23K4lMs5xWKRkJQEimmHQuLrW5p26RLLX163tChoxmMfD_6yg51lOUJHgssKSbeqlP_CL8sMfaHlfvpPtQcE88eNYBD8Whf6yHactF8BrtjTIMe8BzKzN2S0EiqQlzySX4_i267ndMsUNlZ2tv84Kz7ec78UoNqAWJGt7GWRygojViwQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.2.0%2Ffreesurfer_7.2.0_amd64.deb<https://secure-web.cisco.com/1RHHWRJGCCc4H4MkNP_B7nU6cNNsVWadgyrLpB0tyfyLelLCgx8S7xne08K_OxAUKOcUfAuNtQ2vjSE5BH079f4zstM88f1E5_qU3w9V9xnOV5wqQqdD0cRbPWZZ-m1FfVGe7UwH0U-wVYc4QdgQoLX-vU3Nuv5tb03FT5QrcjjiPJTolnAvfJaII9FrztT4KENM-nw5OeUAuQDrKY6coWOwppWXHndDIUPCLF5w_pRDWlnTvn6nAWMZmXY9WP_XtJVQh1g0O3Msx2yddIAjLpA/https%3A%2F%2Fsurfer..nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.2.0%2Ffreesurfer_7.2.0_amd64.deb>
$ sudo apt-get install ./freesurfer_7.2.0_amd64.deb
- which should give you /usr/local/freesurfer/7.2.0
You can always uninstall it.
- R.
On Nov 1, 2021, at 20:54, Alvarado,Luis R <luis.alvar...@louisville.edu> wrote:
/lib/x86_64-linux-gnu/libcrypt.so.1: version `XCRYPT_2.0' not found
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