You need to tell it what to do, eg, -all to do everything.
On 11/15/2021 8:49 AM, Alison McDonnell wrote:
External Email - Use Caution
recon-all.log is attached. have tried to run again with different data
and had the same problem
On Wed, 10 Nov 2021 at 22:39, Douglas N. Greve
<dgr...@mgh.harvard.edu> wrote:
And send the recon-all.log file
On 11/10/2021 10:57 AM, Alison McDonnell wrote:
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the full line after setting up the environment is
recon-all -i /Users/ali?Arch_Raim/IM-0001-0001.dcm -s IM-0001 -all
On Wed, 10 Nov 2021 at 15:53, Tim Schäfer <ts...@rcmd.org
<mailto:ts%2...@rcmd.org>> wrote:
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Dear Alison,
Could you copy&paste the full command line that you are using
to run recon-all?
Best,
Tim
--
Dr. Tim Schäfer
Postdoc Computational Neuroimaging
Department of Child and Adolescent Psychiatry, Psychosomatics
and Psychotherapy
University Hospital Frankfurt, Goethe University Frankfurt am
Main, Germany
> On 11/10/2021 4:48 PM Alison McDonnell <amcdo...@tcd.ie> wrote:
>
>
> External Email - Use Caution
>
> when i run recon all it creates all the subfolders but
they're empty. the
> only thing that is actually generated is orig.mgz and
rawavg.mgz in the mri
> subfolder. i didn't get any errors when running recon all
so was hoping
> someone could shed some light on this.
>
> Many thanks
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