External Email - Use Caution Thank you so much for your reply Eugenio.
I have 16 GB of RAM. Do you think this would be a problem? Thanks again, Georgia > On 18 Nov 2021, at 10:04 PM, Georgia Kapizioni <geo.kapizi...@gmail.com> > wrote: > > Dear Freesurfer experts, > > I am trying to run hippocampal subfields segmentation, using the command: > segmentHA_T1.sh subject > The analysis is running for approximately 20 mins and then the following > error appears: > > f this problem is reproducible, please submit a Service Request via: > > http://secure-web.cisco.com/11Mc3CMrLGgkPD-QRis2_uj_aniCfHMJdirWPDO6Lv4rlGzfTrDQ_DRUfamZnfjWsXSrUNMheFJUGqpeoDn3rLhFQ7OFNuwLuc4dmn-EP6fpz8iItS8-7G9F5VNi04adeNc_ktzSYv-5UYFOOzJyTw_gdAdy7JqzbMD_2RkmsMThSOkvX0kLu1186qGOrFR-Q6g5tam8tRbpDLS2RV6iO9Zone-6AK3JQ6aIQmsy8Ti88BukKMOnLhiZLvz1rXfgrU0BRmgBxXXnVSEFG45tfRYCVm38_iIYliwM026X5uSU8LOcyFB5Kc4K7e4ujivf98WgmoZO7D9Uf5bJtehPs-Q/http%3A%2F%2Fwww.mathworks.com%2Fsupport%2Fcontact_us%2F > > <http://secure-web.cisco.com/11Mc3CMrLGgkPD-QRis2_uj_aniCfHMJdirWPDO6Lv4rlGzfTrDQ_DRUfamZnfjWsXSrUNMheFJUGqpeoDn3rLhFQ7OFNuwLuc4dmn-EP6fpz8iItS8-7G9F5VNi04adeNc_ktzSYv-5UYFOOzJyTw_gdAdy7JqzbMD_2RkmsMThSOkvX0kLu1186qGOrFR-Q6g5tam8tRbpDLS2RV6iO9Zone-6AK3JQ6aIQmsy8Ti88BukKMOnLhiZLvz1rXfgrU0BRmgBxXXnVSEFG45tfRYCVm38_iIYliwM026X5uSU8LOcyFB5Kc4K7e4ujivf98WgmoZO7D9Uf5bJtehPs-Q/http%3A%2F%2Fwww.mathworks.com%2Fsupport%2Fcontact_us%2F> > > A technical support engineer might contact you with further information. > > Thank you for your help.** This crash report has been saved to disk as > /Users/theodore/matlab_crash_dump.4118-1 ** > > MATLAB is exiting because of fatal error > /Applications/freesurfer/7.1.1/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: > line 33: 4118 Killed: 9 > /Applications/freesurfer/7.1.1/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML > 6529 /Users/xxx/Downloads/xxx/qcache 0.333333333333333333333333333333333333 > /Applications/freesurfer/7.1.1/average/HippoSF/atlas/AtlasMesh.gz > /Applications/freesurfer/7.1.1/average/HippoSF/atlas/AtlasDump.mgz > /Applications/freesurfer/7.1.1/average/HippoSF/atlas/compressionLookupTable.txt > 0.05 left L-BFGS v21 '/Applications/freesurfer/7.1.1/bin/fs_run_from_mcr > /Applications/freesurfer/7.1.1/bin/' 0 > Darwin MacBook-Pro-Theodore.local 20.3.0 Darwin Kernel Version 20.3.0: Thu > Jan 21 00:07:06 PST 2021; root:xnu-7195.81.3~1/RELEASE_X86_64 x86_64 > > T1 hippocampal subfields exited with ERRORS at Πεμ 18 Νοε 2021 15:34:58 EET > > > Attached please also find the script output. I am using the 7. 1. > version of FS. > > > Could you please help me resolve this issue? > Thank you in advance, > Georgia > > > <hippocampal-subfields-T1.log>
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