Thanks Doug! Unfortunately, removing the parallel flag didn’t help: “ … After retessellation of defect 43 (v0=79551), euler #=-51 (145804,431777,285922) : difference with theory (-68) = -17 CORRECTING DEFECT 44 (vertices=9236, convex hull=4698, v0=79649) Command terminated by signal 11 @#@FSTIME 2021:11:17:14:54:07 mris_fix_topology N 14 e 12788.52 S 1.14 U 12786.35 P 99% M 1761016 F 0 R 581366 W 0 c 79248 w 3 I 0 O 3960 L 1.01 1.00 1.00 @#@FSLOADPOST 2021:11:17:18:27:16 mris_fix_topology N 14 1.00 1.00 1.00 “
Any ideas? Thanks again, Noam From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Douglas N. Greve Sent: Wednesday, November 17, 2021 10:09 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all reconbatchjobs Segmentation fault I'm not sure what is happening. Does it work without the parallel flag? btw, you are not using 7.2 here's your build: build-stamp.txt: freesurfer-linux-ubuntu18_x86_64-dev-20210824-e101185 On 11/16/2021 4:26 PM, Peled, Noam wrote: Dear Freesurfer group, I was running recon-all (Freesurfer 7.2 on Ubuntu) and received the following error: “ mris_fix_topology -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 UC07 rh Waiting for PID 6337 of (6337 6340) to complete... Waiting for PID 6340 of (6337 6340) to complete... /home/basuia/Documents/mmvt_root/freesurfer/bin/reconbatchjobs: line 77: 6340 Segmentation fault (core dumped) exec $JOB >> $LOG 2>&1 PIDs (6337 6340) completed and logs appended. “ Please find the log file attached. Any idea what is the problem? Thanks, Noam _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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