sorry, no picture attached. Can you resend?
On 11/29/2021 2:40 AM, achille.teil...@chu-lyon.fr wrote:
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Dear experts,
We are working with a large MRI dataset (FLAIR, T1) and we are
performing recon-all based on the 3D T1. At the end, no error is
detected but the visualization of the pial, white and inflated
surfaces in freeview is somehow bad as you can see on the picture
attached (lh.pial_freeview, lh.white_freeview, lh.inflated_freeview).
Can it be an error that I missed and is there a way to correct it ? Or
could it be a 3D rendering issue that can be fixed with visualization
options ? Oddly, when I zoom really close for all surfaces, it seems
perfectly smoothed... I thought first it could be linked to the
topological defect correction (which I didn’t do) but when I display
the surfaces with paraview it works fine as you can also see on the
picture attached (lh.pial_paraview, lh.white_paraview,
lh.inflated_paraview). Everything works fine otherwise.
Thanks in advance for any help you may provideand I can send you some
screenshots highlightening the issue or the recon-all log.
Best,
Achille Teillac
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