External Email - Use Caution Dear Tim,
Thank you for your reply. I used these two commands and now it seems that everything worked fine: 1) cd glmdir/contrast fscalc gamma.mgh div ../rstd.mgh -o cohensd.mgh 2) mri_segstats --i cohensd.mgh --seg cluster.sig.ocn.mgh --exclude 0 --sum test.output After using the second command, I can open the test.output file and see the mean Cohen's D of each significant cluster. Is correct the second command? mri_segstats --i cohensd.mgh --seg cluster.sig.ocn.mgh --exclude 0 --sum test.output Thank you very much. Best regards, Steve. El sáb., 25 dic. 2021 15:57, Tim Schäfer <ts...@rcmd.org> escribió: > External Email - Use Caution > > Hi Steve, > > what exactly do you mean by unable to open? What happens if you try to > load it as an overlay for fsaverage in FreeView? Is there any error message > if you try to open it? > > Best, > > Tim > > > -- > Dr. Tim Schäfer > Postdoc Computational Neuroimaging > Department of Child and Adolescent Psychiatry, Psychosomatics and > Psychotherapy > University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany > > > On 12/22/2021 5:02 PM Steve Petersen <marfne...@gmail.com> wrote: > > > > > > External Email - Use Caution > > > > Dear Freesurfer experts, > > > > I would really appreciate it if anyone can give me some guidance about > this > > question that I posted a few days ago. I conducted a One-way ANOVA and > now > > I would to report the Cohen's D effect size for each pairwise comparison > > (t-tests). For that purpose, I estimated the Cohen's D effect size of > > significant clusters using the suggested command > > < > https://secure-web.cisco.com/1X891GVe1oH7WnmTPBGAEzMHwOsWJmix391s9QJXxMfAcqdheP__HRM8V-6y8Ex3czwzr3E908fS7Hi6Ct_l2LZe2L1p8y8mZ4uVDvXEsKWHFo7SiNOAPFmJ4waZHuZCoE5cUimkRnnEHEc-Bd_uZj6YxAv1UwUF_tNXnGj3YzbePeOge7ccWlp2KlLFS0zYQRZFVrxzjd0jiYy1CIOKm4exZqpE_i1bujkCEzLsXOKy5c7ic5HlkskGnXqAV83lvx60-hNMS3ZrZsjq-eXBRQB1P-dp1KKrgIEBDGUMoItwgqz5YmOmWwE5fOWy-iI8BmK2hHfa1L01J_6bU-Z6ACw/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg52144.html > >: > > > > > > fscalc gamma.mgh div rstd.mgh -o cohensd.mgh > > > > Now, I get the cohensd.mgh file but I am not able to open this file. How > > can I see the particular effect size of each significant cluster included > > in the sig.cluster.summary file?. > > > > Thank you very much in advance for your time! > > > > Best regards, > > > > Steve, > > > > El mié, 15 dic 2021 a las 19:14, Steve Petersen (<marfne...@gmail.com>) > > escribió: > > > > > Dear Freesurfer experts, > > > > > > I am attempting to estimate the Cohen's D effect size of significant > > > clusters using the suggested command > > > < > https://secure-web.cisco.com/1X891GVe1oH7WnmTPBGAEzMHwOsWJmix391s9QJXxMfAcqdheP__HRM8V-6y8Ex3czwzr3E908fS7Hi6Ct_l2LZe2L1p8y8mZ4uVDvXEsKWHFo7SiNOAPFmJ4waZHuZCoE5cUimkRnnEHEc-Bd_uZj6YxAv1UwUF_tNXnGj3YzbePeOge7ccWlp2KlLFS0zYQRZFVrxzjd0jiYy1CIOKm4exZqpE_i1bujkCEzLsXOKy5c7ic5HlkskGnXqAV83lvx60-hNMS3ZrZsjq-eXBRQB1P-dp1KKrgIEBDGUMoItwgqz5YmOmWwE5fOWy-iI8BmK2hHfa1L01J_6bU-Z6ACw/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg52144.html > >: > > > > > > > > > fscalc gamma.mgh div rstd.mgh -o cohensd.mgh > > > > > > Now, I get the cohensd.mgh file but I am not able to open this file. > How > > > can I see the particular effect size of each significant cluster > included > > > in the sig.cluster.summary file?. > > > > > > Thank you very much for your help! > > > > > > Best regards, > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://secure-web.cisco.com/1DzWVfD7aS3RdSncH3YwQ3Gj-hgoNwquNSuAofwpNP31cDynL2xd2pSKjoIWA3ul3pF2QUWS6xwforZUGNvOjq0gUlXCH6YrmQRhFgDbwqvGLGkgks3D45HwD1Po5jsnZ1OHc0htwaNGHlWqDQjBHeVHR7zpgg_q9kZUMq2IfIpGOGpChoPxaP2lTUlFlS8fouQ8AxcY2OTE-EHQWovNIEEhrP1UZNN8ZEVIMdouf_bzoVo26YAp7GqmlDMniaa43UJSAaycNU-0ViAu1_MStJj5i17R-hj6bP9xQpxkw2zgZ2Xuepc0ZONsZrxf9TnTACRZ_KrPDHhrs769GH_cyKA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1NDcgEvrY7HMK1td_Qv2dzzeMNvx6MdxI2W8VRX_lwQfI1gv9lKVAYxK58nDQWhth_kh5zVHfgQO06YD6DyH5E4wrxYWmlx07vx-g7Rq_drgQpRqDqrCQHUc4Vg1bJWrOs-x2rNZyZ26tn6DxYuJ5CFyvYDlaiYF099OVNH-_-8b5j5DDH5drdiE7rVcTnxFLUi4mvzyRdDrvDlTh5eSdDPzWDgDDXRvhZ4BbHakcE2nHUb4_T9GfnkEm39yduBqkjWLLFXOx-ZrbNzPx1U4pN2VXoEpbYU-jQrJbfk_GOPq4IxMR3OPjYap5IkFRFe4c/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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