Thanks, Tim,
The lh.white.K and lh.white.H were created.
Thanks,
Noam
-----Original Message-----
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Tim Schäfer
Sent: Friday, January 14, 2022 11:18 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] recon-all: error in creating rh.white.H
External Email - Use Caution
Can you check whether any of the .H/.K files were created? They contain the
per-vertex mean/Gaussian curvature for the respective surface, but what's more
important is that they are symbolic links.
If you try to save recon-all output onto a drive formatted with a file system
that does not support symbolic links (e.g., a shared network drive from a
Windows file server), the files cannot be created, leading to that error. Could
that be the case?
Best,
Tim
--
Dr. Tim Schäfer
Postdoc Computational Neuroimaging
Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy
University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
> On 01/14/2022 5:02 PM Peled, Noam <npe...@mgh.harvard.edu> wrote:
>
>
> Dear group
> A colleague of mine was trying to run recon-all on one of her patients and
> received an error message.
> After looking at the attached log, I'm not sure what is the source of the
> problem.
> The T1 looks quite good.
> She is using freesurfer-linux-centos8_x86_64-7.2.0-20210720-aa8f76b
>
> Thanks!
> Noam
>
> From: Gumenyuk, Valentina <vgumen...@unmc.edu>
> Sent: Friday, January 14, 2022 10:48 AM
> To: Peled, Noam <npe...@mgh.harvard.edu>
> Subject: UNMC error
>
>
> External Email - Use Caution
> freesurfer-linux-centos8_x86_64-7.2.0-20210720-aa8f76b
>
>
> Thanks!
> -Valia
>
> The information in this e-mail may be privileged and confidential, intended
> only for the use of the addressee(s) above. Any unauthorized use or
> disclosure of this information is prohibited. If you have received this
> e-mail by mistake, please delete it and immediately contact the sender.
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://secure-web.cisco.com/15fpD1EZKYIPF5FTqhCsh6KqKagx-93YG5RV1GAKR
> ILb6t3CkavMjWW_nxwyyxu1PN1TgscB4QZ-FytHeSqusptpTywRWLdz_UesUhERZ2HIf9b
> L5hfdwcdkxDCN6nk3G2WGPfUe5b4BqrPtwnpBtDa68vhEU9dAA3zR3NL0EHuX9l1Vu0G7u
> kg4U4DsnOQCtsMVkLpl9kh-2KLVWMzqMbCS35tNLuuidP_2MLx-JsjGIKlvTVS4nQQRho-
> _KkEoZw95d89dU2R7x1uqPPqVr8qn6RI2BuY6jBIbPfjf2Hms-gHBVxq4dDVWf658Kn_D5
> DLolT5vygUW88Hfuu-A7hQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailma
> n%2Flistinfo%2Ffreesurfer The information in this e-mail is intended
> only for the person to whom it is addressed. If you believe this e-mail was
> sent to you in error and the e-mail contains patient information, please
> contact the Mass General Brigham Compliance HelpLine at
> http://secure-web.cisco.com/1muAKl-0chIdFdM-bg04dTHE1SgDwyUMMkCqL_ZKIBJRk74sb6FP84paklTjShhu2cJep78bftS7TUR0nk1khdPYgt3J-TuTjZh_bjUL-bFkYmPlEopMt1Mtrl7lbQRLmGZlomcbkMq5F77PxxzwZl30PTeScFstxDMf4EiqzVl87YunkSSY18bi_0IhZOGnjjsbGgIW9iiAUsRGk-vg59E_7QL0MoM5pcQubNNMRit2tahN6qLimwYTXD8QBvlxt32HVBEaZDgNyUwBEDS9sPpK1SwpQW9vTzOm4_Qal5mVlEXtc0lZLrQZ3oYuq5qCkIw3wfzsMhlyjn1mBqVoC8A/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline
> . If the e-mail was sent to you in error but does not contain patient
> information, please contact the sender and properly dispose of the e-mail.
> Please note that this e-mail is not secure (encrypted). If you do not wish
> to continue communication over unencrypted e-mail, please notify the sender
> of this message immediately. Continuing to send or respond to e-mail after
> receiving this message means you understand and accept this risk and wish to
> continue to communicate over unencrypted e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If
the e-mail was sent to you in error but does not contain patient information,
please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
