External Email - Use Caution Dear Dr. Yendiki,
Thank you so much for your reply. Yes, the command can run without the "--1d" flag. But, I thought that the flag is "required for any along-tract analysis" as stated in your TraculaStatistics instruction and highlighted in the release notes for v7.2 (added 1D capability for mri_glmfit-sim). I would greatly appreciate for your further clarifications. Thank you so much for your help. Best regards, Taka On Thu, Jan 20, 2022 at 1:09 PM Yendiki, Anastasia <ayend...@mgh.harvard.edu> wrote: > Hi Taka - Does it work when you remove the "--1d" from the command line? I > think that must be an error in the documentation. > > Anastasia. > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Tarumi Takashi < > tak...@gmail.com> > *Sent:* Wednesday, January 12, 2022 7:04 PM > *To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] mri_glmfit-sim error: Flag --1d unrecognized > > > External Email - Use Caution > > Dear FreeSurfer Developers: > > I am attempting to perform cluster-wise correction for the along-tract > measures, as described on the Tract statistics tutorial (*MailScanner has > detected a possible fraud attempt from "secure-web.cisco.com" claiming to > be* > https://secure-web.cisco.com/14xTl-nXfhrT5s1HVQuP9A9vkMOy3hcNKfB2a4mLefQS6dl6-aqoECeHaosa2LFWdLTjGO9Fy1kpdjM631BpxovShFWZZnQP-Dhdr006lWhdN-X6ybWNDqx6uSWRU5YWSDVYXJgieK0q39yS1emZyDSqxj6jNaEcWN-5cwAEmoIVCE7D3-RJanSNI6Y0iBm7_FJQA64D0dGcvdndr0MX26xv_TB1PK0yL_ZbmoLx7M03L4-QTP3ky_P2xLnlWnkIdLXLbDrDPUsHQCR_om50OzamOsL2Xoz19qWPFmM38lhRQh0eJesWJzbQwhwh0WQyEAY2SL9gQ06L1NaykAWbh0Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTraculaStatistics > <https://secure-web.cisco.com/1k_UHTgDkMyztiBV5VO6PazEUkIHIp4tFCos8o1vMfT5XasrL80AhnLun3nO3SbemuhiScR_HhzrdGaw0p1j5nK5lhe10k7-lPaCijiC0Vh7MQ0yuekVDkLDVrJqmG8Iv7dJngPrQuEM0Hi8ZnXXatPZFWA1aWQoWHkUSICt5kTu0nJuvpZHOUVg_RNMdlWUhH2kGUUGxeihwX0Nt22xOH5wPY2jNspczuzK2y2bSu-wVlXPvrnE1NXoh1Xk07_LOqY3hqWmAMeIEzH8SYeketuWolK-kKBMySEzU8Qcf85MkxF8ulxY7sh4wOn1doxI61CJ2S55Gnkqug92Kav4Oew/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTraculaStatistics>). > But, when I run the command below, the flag --1d is not recognized. > > Command: mri_glmfit-sim --glmdir cc.bodyp.FA_Avg.glmdir --1d --cwp .05 > --perm 1000 1.3 pos > Error: Flag --1d unrecognized. > > I could not find similar errors reported. Does anyone have any thoughts on > how to trouble-shoot this? The FreeSurfer version I'm using is 7.2.0 on an > M1 Mac machine with macOS 12.1. Thank you so much for your help. > > Sincerely, > Taka > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1c51EnIhRXtzkHburMSaQUmVRU0BIZ6uq-xugQ3xdPrY67ZHatwrT_1o6kNybL5vOPdHmSemNhXUAHUQl0YO86iOULYs_ukdvCUyV76_hpxE6Qhg-MwNL5AvnE0INhaSnOGc3YsWGmi5KMXHuPX3ucAspb1p_VRk6lBjsRwsYPfRFAWkC5XkVOxUNEhc3av0B0mruH7u_2t8chrbljbtB0SarB-x7xkDHt6QmtdKe63stRvHPng9g-hk2cprpba4vb7_zqmiCpcopFlHpdTTosMJdp1C9PhMFZ1Z3Dfq_OLE_oS8Nk3vxau3F1oBjgLsAf817EsxRI85YEHnp-vI7Cg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > http://secure-web.cisco.com/1y8tm5nemVBxe3PYik6D1CXDssoJlAY62qadNY4ruULTuoLFpBDxdcscLDWzq2sV0yTXpZ5mdtiXfU6z497WV_Yn_R_53l2imBscoZfXVrp0PfLrx3Y99fH9HHmaqxOyQOmLR-JDNyKxWKRa5lbXEOkGw0TPJl8qtl8GWbqaVcyGuYwei1FfloMxImv_BEFJpsbsybw4smVs0kuw-X6yhAmeSC5afNs6X45qUazXZOO3_BBIzRxDh7-XhNYdMz8N5CSK3dTZ9V6qCPuTWlGbPXgRnPU3oO409PX8mbPp7XnWK8fHDw8aZf1WvHB-AUfugM0vDs1Y_yxPaMVae9WmtRQ/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > . If the e-mail was sent > to you in error but does not contain patient information, please contact > the sender and properly dispose of the e-mail. > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. >
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