You can use eg, -auto-runseq mgz, this will unpack all scans as
runno.seqname.mgz (eg, 0004.mprage.mgz). You might want to add
-no-exit-on-error so that it does not exit when it finds a run that it
cannot convert.
On 1/14/2022 8:44 PM, Shi, Yuelin wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I am using dcmunpack to unpack a data session that is composed of many
series/runs. It seems that I can only feed in unpacking rules for one
of the runs at a time by the “-run run subdir format stemname”
command. Also for each data session like this, it seems I’ll need to
manually type in the run number and its rule everytime.
We actually just moved from a Siemens scanner to a GE scanner. With
Siemens, the unpacksdcmdir function accept seqcfg file that only needs
to be written once and will be able to apply to any sessions. I wonder
with dcmunpack 1) if there is at least a command that allows unpacking
all the runs together? 2) Moreover, is there a way to specify the
whole set of rules as a seqcfg file that will be easily applied to all
future sessions? Thank you very much!
Best,
Yuelin
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