Is there a blank subject line in the lta file? If so, it is probably trying to get the subject from there. You can try putting the --s after the --lta
On 2/21/2022 3:43 PM, Tisdall, Dylan wrote: > External Email - Use Caution > > Hi all, > > Quick question on a puzzling error with bbregister version 7.1.1. When I run: > > bbregister --s 126346 --mov mgz/7T_MEMPRAGE --init-reg 7Tto3Tinit.lta --reg > 7Tto3T.lta --o 7TMEMPRAGE_warped.mgz --t1 > > I get the error: > > ERROR: must spec a subject id > > which I thought I'd done with the --s flag. What am I missing? > > Even more odd, if I just move the to the end of the command, bbregister will > run, but eventually fails with: > > error: > mghRead(/hom/mtisdall/Research/7TAnalysis/subject//subject-unknown/mri/orig.mgz, > -1): could not open file > > Is there something obvious I'm doing wrong with these two command lines that > cause these behaviors? > > > Thanks, > Dylan > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
