Yea, not so easy. You need to see how far it got and then use the
appropriate flags. The most time consuming step is the volume labeling.
See if aseg.presurf.mgz exists. If it does, then you can skip that with
-autorecon2-noaseg -autorecon3. If subject/mri/transforms.m3z and
norm.mgz exist but not aseg.presurf.mgz, then you could run with
-autorecon2-noaseg -autorecon3 -careg
On 3/8/2022 3:05 PM, Hossein Rahimzadeh wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
Due to the fact that the freesurfer runs for a long time, the computer
is turned off several times during the run due to electricity
fluctuations. How to complete unfinished steps of recon-all.
I tried to continue the analysis with the command "recon-all -make all
-s subject, but" I got the following error:
ERROR: -make is no longer supported
1)freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b
2)linux ubuntu 20.04
3)two recon-all.log of two subjects have attached
Best regards,
Hossein Rahimzadeh Biomedical Engineering, MSc. Shahid Beheshti
University of Medical Sciences, Tehran, Iran.
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