Can you try tkregisterfv ? The old tk tools are not supported any more.
tkregisterfv uses freeview
On 3/17/2022 6:03 AM, Nathan Kindred (PGR) wrote:
External Email - Use Caution
Hi Isabelle,
It’s been a couple of years since I ran FreeSurfer on a Mac, but I
also have had this issue before and it was due to the macOS. I don’t
know if anything has changed recently but if not then the only
solution would be to try to install an older macOS that will support
32bit apps.
Best,
Nathan
*From: *freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Isabelle
Deschamps <isabelle.descha...@georgiancollege.ca>
*Date: *Wednesday, 16 March 2022 at 19:20
*To: *freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject: *[Freesurfer] FW: Tkregister2 not opening GUI
⚠External sender. Take care when opening links or attachments. Do not
provide your login details.
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Good afternoon,
I am following up on my question regarding the GUI for TKregister2 and
TKregister2_Cmld not opening.
Is there another way to open the GUI?
Thank you kindly for your help,
isabelle
*From: *Isabelle Deschamps <isabelle.descha...@georgiancollege.ca>
*Date: *Thursday, March 10, 2022 at 14:52
*To: *freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject: *Tkregister2 not opening GUI
Good afternoon,
I am trying to verify the registration and for some reason the GUI is
not opening.
I am using a Macbook Pro running macOS Montery with a 2.4 Gz Quad-Core
Intel Core i5
I have Freesurfer version: maOS-7.2.0
I do not get an error when I run TKregister2 or TKregister_cmld
This is the output that I get without the GUI opening
No target volume specified, assuming FreeSurfer orig volume.
targetvolume orig
movable volume (null)
reg file(null)
LoadVol0
ZeroCRAS1
7.2.0
Diagnostic Level -1
% % % % % % % % avi2talxfm
talairach.xfm ---------------------
1.008570.02020-0.00990-0.12365;
-0.017891.032510.24795-28.10577;
0.02556-0.306601.209133.54973;
0.000000.000000.000001.00000;
INFO: loading target
/Volumes/RestingState/fMRI/fMRI/Freesurfer/S0010_FS/mri/orig.mgz
Zeroing CRAS of target
new xfm -----------------
1.008570.02020-0.009901.93629;
-0.017891.032510.24795-11.46406;
0.02556-0.306601.20913-50.28331;
0.000000.000000.000001.00000;
---------------------
Ttarg: --------------------
-1.000000.000000.00000128.00000;
-0.000000.000001.00000-128.00000;
0.00000-1.000000.00000128.00000;
0.000000.000000.000001.00000;
INFO: loading movable
/Applications/freesurfer/7.2.0/average/mni305.cor.mgz
Tmov: --------------------
-1.000000.000000.00000128.00000;
0.000000.000001.00000-128.00000;
0.00000-1.000000.00000128.00000;
0.000000.000000.000001.00000;
mkheaderreg = 0, float2int = 0
---- Input registration matrix --------
1.008570.02020-0.009901.93629;
-0.017891.032510.24795-11.46406;
0.02556-0.306601.20913-50.28331;
0.000000.000000.000001.00000;
Determinant 1.33659
subject = S0010_FS
RegMat ---------------------------
1.008570.02020-0.009901.93629;
-0.017891.032510.24795-11.46406;
0.02556-0.306601.20913-50.28331;
0.000000.000000.000001.00000;
UnZeroing CRAS for fstal output xfm
Any help would be greatly appreciated.
Isabelle
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