External Email - Use Caution Hi Victor,
in case you used mri_convert like this only, there is no change in orientation or spacing between orig.mgz and T1.nii. So, whatever you registered to the T1.nii should also be in space of the orig.mgz. Best, Falk ............................................... [http://secure-web.cisco.com/1bMxxPB2IQvUkA27JpoN6uYF_qZIvBhG7A1lEk_pEPVLjceSNqAuh2ELQrVXqmNwDxO-gqw8L1AEdbpyg24KUrplVS1nVMpzDvZMnLlMlxDizz858uiYsVJw3j_eJAy3F8ROeMbQQGdCNQdGmudIjjmSP-DmuF6zEpoivRhwTB0E-WM34a9y1lhuAPv-VfV01N0gdTr1Xu0mAeJ3pD89NxapxypjmT7CmixQuxq7DTT7jBhVsiWkIKPyDpRhTYXFDyhcmx2miIgf8JZXKyLUXTZiFip_eG0Rh9fS0KS7VC72MB4ubvSdGrS9rptNnBeE85QA02JCM-cayZ2SoocYUMw/http%3A%2F%2Fwww.med.ovgu.de%2Funimagdeburg_mm%2Fummd_focus.gif] Universitätsklinik für Neurologie Otto-von-Guericke-Universität Magdeburg Medizinische Fakultät Leipziger Str. 44 39120 Magdeburg Telefon: +49-391-6117-512 falk.luesebr...@med.ovgu.de<mailto:falk.luesebr...@med.ovgu.de> http://secure-web.cisco.com/1Ot95tcBSI8NwAu9j3-MCi-WNazHI1x3J_Wd7KLcLqqDxbYOgUclzwlyOXOLYHH412QcBGDnXDUOxzgguWCcQel8L9ZaACvmWHS4zTEdK8m4QYnGS7xdkGY5RGp0vFAppqrzydZAf5JmpYcPyBnyWZKvGyEXVs4m-zIc-l0qYdee1xdYpnuNye9cAN_EA7WpEICaRtzUMDWnXay-IFvAa1sx-CEhdTWl_sspDuOZKqHB0SYGJ-szyMlAYGZFOOg42NNc91WEMisk0SlaKG7_cgfvjHUrowbBBNtrdR_lL3mwsJ8-Tq9I_Xgwp-2hdoPYS4GVMivfLvRmcMR4Gt4lZkA/http%3A%2F%2Fwww.kneu.ovgu.de%2Fkneu.html ________________________________ Von: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> im Auftrag von Zeng, Victor (BIDMC - Keshavan - Psychiatry) <vz...@bidmc.harvard.edu> Gesendet: Donnerstag, 5. Mai 2022 10:09:26 An: freesurfer@nmr.mgh.harvard.edu Betreff: [Freesurfer] Reversing mri_convert External Email - Use Caution Hi, I convert orig.mgz -> T1.nii using mri_convert orig.mgz T1.nii I now have something registered to the T1.nii and would like to move it back to Freesurfer space. How would you go about doing that? I am assuming I would do the inverse of the mri_convert, but I can't seem to find the option to write the matrix. Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
