You will need an lta file that maps from the anatomical to the fmri. You
can get this with something
bbregister --mov template.nii.gz --s subject --t2 --reg reg.lta
where template.nii.gz is the fmri motion correction template or the mean
fmri (I forgot what it is called in FSL)
On 6/3/2022 5:12 PM, Kuo, Yi-Ling wrote:
Hi Freesurfer experts,
I am trying to use the Freeview GUI to load fMRI BOLD activation data
(analyzed in FSL) and project on the inflated surface. I used the
feature “Overlay/Load generic” and was prompted to select overlay file
and/or apply registration. The selected overlay file didn’t seem to
project on the right spot on the inflated surface as would be seen in
T1. If registration was the issue, what registration file should be
selected in the Freeview GUI?
My Freeview was updated. Thank you very much for helping.
Irene
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
