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You should contact the sender, and if you are sure that the original attached file(s) are safe, please use the Partners Secure File Transfer system, https://transfer.partners.org <https://transfer.partners.org> to work with the sender to securely transfer the removed attachment(s). If you do not have an account on the Partners Secure File Transfer System, please register for an account by using the following steps: 1. Go to https://transfer.partners.org <https://transfer.partners.org> 2. Click on "I don't have an account yet" 3. Enter your email address and click Register 4. You will receive an email with final instructions More information can be found at http://rc.partners.org/sFTP <http://rc.partners.org/sFTP> (Partners login required) If you have any questions or issues please enter a ticket in ServiceNow or call your Service Desk. **** Original message follows **** External Email - Use Caution Hi, We run freesurfer 6 on an HPC environment. We received this error when trying to run an asegstats2table script: [jabsher@node0130 results]$ ./asegstats2table_scr File "/zfs/hpcnirc/usr/bin/freesurfer/bin/asegstats2table", line 195 print 'ERROR: subjects are not specified (use --subjects SUBJECTS)' ^ SyntaxError: invalid syntax File "/zfs/hpcnirc/usr/bin/freesurfer/bin/asegstats2table", line 195 print 'ERROR: subjects are not specified (use --subjects SUBJECTS)' ^ SyntaxError: invalid syntax [jabsher@node0130 results]$ We are running this version: You are running this version of FreeSurfer: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Here are the loaded modules: Currently Loaded Modules: 1) libxml2/2.9.10-gcc/8.3.1 2) openblas/0.3.10-gcc/8.3.1 3) matlab/2021b 4) anaconda3/5.1.0-gcc/8.3.1 5) openmpi/3.1.6-gcc/8.3.1-cuda10_2-ucx 6) cuda/10.2.89-gcc/8.4.1 The script is attached. We've gone to the wiki page (asegstats2table - Free Surfer Wiki (harvard.edu)<https://secure-web.cisco.com/1eU_J79ltbqe0p9Duk2YmurJuRaHFOpDSqizGlzIClXlSHNDoX01peVPjCFssUOA3Mlb1quthTsKUOfwS65KSww69BVSi4WssLubqfwojanbJzn-txjP9a9dcTomTOV47KEO0yipyn-gnMGh5mQc2nBSnbXc_JNClpRWtfC1J2Sop4yZHPaYE92ZUl5HfmMDILQnf83VYL_C-Cavmj6n8fGo9WczFU394e19usu80uYI_hQzzkzJg185KV2k_S54OlGfGXdu7wD2uN4b430Gi-LCfT5Al1pK98T5MuwWv_bfGXWxOH6MAGE-4ViTJD4OV/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fasegstats2table> and tried essentially all permutations, including specifying the aseg.stats files by name for each subject. The "use -subjects" error comes up every time, and we tried this as specified, with -subjects followed by all the directory/subject names, with a \ at the end of each line for readability. I know this must be something very straightforward, but hoping you can help. Thanks, Warm Regards, John R. Absher, MD, FAAN Associate Professor, University of South Carolina School of Medicine Greenville Department of Internal Medicine, Division of Neurology Clinical Assistant Professor, Clemson University School of Health Research (CUSHR) Graduate Faculty, Clemson University School of Public Health Sciences Prisma Health-Upstate 200 Patewood Drive, Suite 350B Greenville, SC 29615 john.abs...@prismahealth.org<mailto:john.abs...@prismahealth.org> or abs...@mailbox.sc.edu<mailto:abs...@mailbox.sc.edu> or jabs...@clemson.edu<mailto:jabs...@clemson.edu> 864-454-4500 (office) 864-350-6655 (mobile) 864-454-4505 (fax) [cid:image001.jpg@01D89871.8F9C2110] Inspire health. Serve with compassion. Be the difference. ---------------------------------------------------------------------- CONFIDENTIALITY NOTICE This message is intended only for the use of the individual or entity to which it is addressed and may contain information that is privileged, confidential and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this communication is strictly prohibited by law. If you have received this communication in error, please notify me immediately.
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