To mimic the original matlab implementation, segment_subregions saves stats as
*.txt files in the mri subdirectory of the subject.
But maybe we should just save things in the stats folder to be consistent.
Eugenio/Doug, what do you think?
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Alvarado, Luis
<luis.alvar...@louisville.edu>
Date: Monday, July 18, 2022 at 4:11 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segment_subregions stats files missing?
External Email - Use Caution
Hi all,
I ran the segment_subregions thalamus --cross on some of my subjects but I
cannot find the *.stats files in the stats folder. I was wondering if I am
missing something?
I need the *.stats files to aggregate the results via asegstats2table to feed
the mri_glmfit tool. Is there another way to do this without the *.stats files?
I am using the freesurfer-linux-ubuntu20_x86_64-dev-20220716-015eeb0 build on
Ubuntu 20.04.4 LTS.
Best,
Luis
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