External Email - Use Caution Hi Alan,
� As Anastasia said, bet is part of FSL. If you don’t have it installed already, you need to install FSL. � Best, � King-Wai � From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Yendiki, Anastasia Sent: Thursday, August 11, 2022 3:42 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Tracula - Preproc � Yes that's from FSL. It's needs to be in $FSLDIR. _____ From: freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > on behalf of Alan Francis <alandarkene...@gmail.com <mailto:alandarkene...@gmail.com> > Sent: Thursday, August 11, 2022 3:30 PM To: Freesurfer <freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] Tracula - Preproc � � � � � � � � �External Email - Use Caution � � � � � � � � Hi Anastasia, King Wei: � I did as you suggested with the config file and the preprocessing ran for a bit but then an error occurred. I have attached the run script. It says BET not found. Is this the Brain Extraction tool? � Could you please shed some light on this? � thanks so much, � Alan -- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~| Alan N. Francis PhD Assistant Professor of Neuroscience Institute of Neuroscience University of Texas, School of Medicine Rio Grande Valley Texas.
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