I don't think you can. I have not looked at combat in a long time, but I
thought they did their own GLM. combat might take a design matrix, in
which case you could use mri_glmfit and your FSGD to create the design
matrix.
On 8/30/2022 9:37 AM, Rene Seiger wrote:
External Email - Use Caution
Dear FreeSurfer community!
We collected structural data from different scanners and we want to
conduct a surface-based (vertex-wise) analysis in FreeSurfer using
predefined regions of interest. The model is quite simple, as we just
want to correlate a specific (e.g. behavioral) measurement from all
subjects (one group) with the thickness on the surface in specific
ROIs. To account for the different scanner types, we are planning to
use ComBat to account for this effect. However, we are not quite sure
how and at which stage we could implement ComBat using the standard
FreeSurfer FSGD file approach. Any help would be highly appreciated,
Thanks!
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