Yes, some of the commands inside recon-all do not support a field of
view over 256mm, which yours apparently is. I keep meaning to fix this,
but we only see it once a year or so and I forget. In any event, just
add -cw256 to the command line.
On 9/6/2022 10:51 PM, Ellie Shaw wrote:
External Email - Use Caution
Hi there,
I am attempting to perform the recon-all command for my T1 nii file.
When I run the recon-all command I get the following error message:
ERROR! FOV=288.000 > 256
Include the flag -cw256 with recon-all!
Inspect orig.mgz to ensure the head is fully visible.
I am seeking some support to overcome this issue - I understand this
would include the flag -cw256.
Freesurfer version: freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b
Platform: OSX 7.2.0
Recon-all.log file attached below
Thank you in advance!
Kind regards,
Ellie
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
