External Email - Use Caution The design matrix (examining difference in thickness after controlling for effects of age, sex and Average thickness)
1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-HR_testcov.mtx 1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-MDD_testcov.mtx 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > HR-MDD_testcov.mtx Em sex., 30 de set. de 2022 às 13:35, Douglas N. Greve < dgr...@mgh.harvard.edu> escreveu: > almost there -- you did not include the 4th ittem > > On 9/30/2022 11:18 AM, fernanda rohrsetzer wrote: > > External Email - Use Caution > I'm so sorry... > > The FSGD file is attached (called "TestCT.txt). > > The design matrix (examining difference in thickness after controlling > for effects of age, sex and Average thickness) > > > 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-HR_testcov.mtx > > > 1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-MDD_testcov.mtx > > > 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > HR-MDD_testcov.mtx > > > glmfit: > > > mri_glmfit --y lh.10.teste.volume.mgh --fsgd testCV.fsgd --C > Contrasts/LR-HR_testcov.mtx --C Contrasts/LR-MDD_testcov.mtx --C > Contrasts/HR-MDD_testcov.mtx --surf fsaverage lh --cortex --glmdir > lh.groupteste.volume.glmdir --eres-save > > > Print of the screen is attached to (3 images). > > Thank you so much!!! > Fernanda > > Em sex., 30 de set. de 2022 às 11:25, Douglas N. Greve < > dgr...@mgh.harvard.edu> escreveu: > >> That terminal output asks you to send 4 things, but you only sent 2 >> >> On 9/29/2022 11:51 AM, fernanda rohrsetzer wrote: >> >> External Email - Use Caution >> >> Hi, >> I attempted to execute mri_glmfit on my structural data through the >> following command - >> >> mri_glmfit --y lh.10.teste.thickness.mgh --fsgd testCT.fsgd --C >> Contrasts/LR-HR_testcov.mtx --C Contrasts/LR-MDD_testcov.mtx --C >> Contrasts/HR-MDD_testcov.mtx --surf fsaverage lh --cortex --glmdir >> lh.groupteste.thickness.glmdir --eres-save >> >> But it gives me an error (attached below) indicating a formatting problem in >> my FSGD file (attached). >> I have been trying to figure that out for a while. But I am unable to debug >> it. >> >> Could someone please help me resolve it? >> Thanks for your time. >> >> >> _______________________________________________ >> Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu*MailScanner has >> detected a possible fraud attempt from "secure-web.cisco.com" claiming to >> be* >> https://secure-web.cisco.com/1QyCc3yzJVby05vR3KB830bnbrzsXoG9x_WaP4hE51gmUJMecn1__lKJlyoo9AtgJT9KQkPcLXt_iwWnsKx_mnj3fTIkN2ZNYrWuwZV_dg3kZm4G9f7nTzVkK4yYZRZCmKFRw0wVUpSEHrxH6HYFkEvjQVKb9BgbpgCCMFry31Qka3TmAKoH24TvBAOk9ZnHwv9Uhg55PfZto-90UgoWZjF_jeV0untKpPJG7EpH2dydWmOYZKUMEJAlnwEd1GlUQ6doeqjEwKdscjweEvuGmxHsrNMz_tqcnyEGGAML54ZRccLGF3UlaM27-P9m6-lOsDcxkuhAQVx7yv981mODONw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> <https://secure-web.cisco.com/1Ccph9ZS_VfLjwevScUiM2zlDLl22OV5S1Qeou2nB7eCavcnOv1bSXZALcd3gx5Z1C8bcrD-Qp6yjtvY9P_QOXs1eL32N6PI0Eu8L4A24j-G3B5taI6T-PM-vX3eDuZilvElG_qFMXEaE2CxmvkFH6NJuxNOy6HIjVyKrlrn1jD-87qooS-qrtop3lGoj-x7pJOFAXa57Hgo-tNLIRN7DB7WC5Im1h_0oVlpptu4ASovvwPu6GHmvbVj6QUbLPNohJTumPyFKAkj2Juk4qjq5WAMNI92irx6YW4BW4X8wBS3hGRVuwqgvqqC1LTREXkPGGdjbbiy0rXR4PCUEasN5Dg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1QyCc3yzJVby05vR3KB830bnbrzsXoG9x_WaP4hE51gmUJMecn1__lKJlyoo9AtgJT9KQkPcLXt_iwWnsKx_mnj3fTIkN2ZNYrWuwZV_dg3kZm4G9f7nTzVkK4yYZRZCmKFRw0wVUpSEHrxH6HYFkEvjQVKb9BgbpgCCMFry31Qka3TmAKoH24TvBAOk9ZnHwv9Uhg55PfZto-90UgoWZjF_jeV0untKpPJG7EpH2dydWmOYZKUMEJAlnwEd1GlUQ6doeqjEwKdscjweEvuGmxHsrNMz_tqcnyEGGAML54ZRccLGF3UlaM27-P9m6-lOsDcxkuhAQVx7yv981mODONw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> <https://secure-web.cisco.com/1Ccph9ZS_VfLjwevScUiM2zlDLl22OV5S1Qeou2nB7eCavcnOv1bSXZALcd3gx5Z1C8bcrD-Qp6yjtvY9P_QOXs1eL32N6PI0Eu8L4A24j-G3B5taI6T-PM-vX3eDuZilvElG_qFMXEaE2CxmvkFH6NJuxNOy6HIjVyKrlrn1jD-87qooS-qrtop3lGoj-x7pJOFAXa57Hgo-tNLIRN7DB7WC5Im1h_0oVlpptu4ASovvwPu6GHmvbVj6QUbLPNohJTumPyFKAkj2Juk4qjq5WAMNI92irx6YW4BW4X8wBS3hGRVuwqgvqqC1LTREXkPGGdjbbiy0rXR4PCUEasN5Dg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> The information in this e-mail is intended only for the person to whom it >> is addressed. 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