External Email - Use Caution Ohh!! I'm so sorry for my stupidity!!! Thank you so much for your patience!!!
Em seg., 3 de out. de 2022 às 10:04, Douglas N. Greve < dgr...@mgh.harvard.edu> escreveu: > those are the contrast matrices. The design matrix will be in the output > folder as file Xg.txt > > On 9/30/2022 11:43 AM, fernanda rohrsetzer wrote: > > External Email - Use Caution > The design matrix (examining difference in thickness after controlling > for effects of age, sex and Average thickness) > > > 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-HR_testcov.mtx > > > 1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-MDD_testcov.mtx > > > 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > HR-MDD_testcov.mtx > > > > Em sex., 30 de set. de 2022 às 13:35, Douglas N. Greve < > dgr...@mgh.harvard.edu> escreveu: > >> almost there -- you did not include the 4th ittem >> >> On 9/30/2022 11:18 AM, fernanda rohrsetzer wrote: >> >> External Email - Use Caution >> I'm so sorry... >> >> The FSGD file is attached (called "TestCT.txt). >> >> The design matrix (examining difference in thickness after controlling >> for effects of age, sex and Average thickness) >> >> >> 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-HR_testcov.mtx >> >> >> 1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > LR-MDD_testcov.mtx >> >> >> 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 > HR-MDD_testcov.mtx >> >> >> glmfit: >> >> >> mri_glmfit --y lh.10.teste.volume.mgh --fsgd testCV.fsgd --C >> Contrasts/LR-HR_testcov.mtx --C Contrasts/LR-MDD_testcov.mtx --C >> Contrasts/HR-MDD_testcov.mtx --surf fsaverage lh --cortex --glmdir >> lh.groupteste.volume.glmdir --eres-save >> >> >> Print of the screen is attached to (3 images). >> >> Thank you so much!!! >> Fernanda >> >> Em sex., 30 de set. de 2022 às 11:25, Douglas N. Greve < >> dgr...@mgh.harvard.edu> escreveu: >> >>> That terminal output asks you to send 4 things, but you only sent 2 >>> >>> On 9/29/2022 11:51 AM, fernanda rohrsetzer wrote: >>> >>> External Email - Use Caution >>> >>> Hi, >>> I attempted to execute mri_glmfit on my structural data through the >>> following command - >>> >>> mri_glmfit --y lh.10.teste.thickness.mgh --fsgd testCT.fsgd --C >>> Contrasts/LR-HR_testcov.mtx --C Contrasts/LR-MDD_testcov.mtx --C >>> Contrasts/HR-MDD_testcov.mtx --surf fsaverage lh --cortex --glmdir >>> lh.groupteste.thickness.glmdir --eres-save >>> >>> But it gives me an error (attached below) indicating a formatting problem >>> in my FSGD file (attached). >>> I have been trying to figure that out for a while. But I am unable to debug >>> it. >>> >>> Could someone please help me resolve it? >>> Thanks for your time. >>> >>> >>> _______________________________________________ >>> Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu*MailScanner has >>> detected a possible fraud attempt from "secure-web.cisco.com" claiming to >>> be* >>> https://secure-web.cisco.com/1tAkyIiRR_p3ExVayEsRwyh8CqSSsuKCNpYVcUBrDn6JE6vEwDQm-a2mDAf3GoQCMnfuz1iez1qW1StK1XeFrFt4tJbJ_S8HWOqy4iUHvsiCnQhE-6JDmItcEB5M-vkmWzatEMIezbePBHQKNOwRdhhVjmXrqOT4OeOWi6Hi1SpDz5zSLHQf12Qc03-q_K3uJeVILdwtOdgGEyWzR2aoOw3R5eeUo6V5iRoM10tyyo5vWYSJbwQF-kBq9X8ohP4XSor_HqGzZarbrMbW8MAXPxiKjwe4k_MKkTHWTdZXDMo9IqAng2j120wU3JDTDm__pTpl3Jr5F9jLljQNgQ1InIQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> >>> <https://secure-web.cisco.com/1Ccph9ZS_VfLjwevScUiM2zlDLl22OV5S1Qeou2nB7eCavcnOv1bSXZALcd3gx5Z1C8bcrD-Qp6yjtvY9P_QOXs1eL32N6PI0Eu8L4A24j-G3B5taI6T-PM-vX3eDuZilvElG_qFMXEaE2CxmvkFH6NJuxNOy6HIjVyKrlrn1jD-87qooS-qrtop3lGoj-x7pJOFAXa57Hgo-tNLIRN7DB7WC5Im1h_0oVlpptu4ASovvwPu6GHmvbVj6QUbLPNohJTumPyFKAkj2Juk4qjq5WAMNI92irx6YW4BW4X8wBS3hGRVuwqgvqqC1LTREXkPGGdjbbiy0rXR4PCUEasN5Dg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "secure-web.cisco.com" claiming to be* >>> https://secure-web.cisco.com/1tAkyIiRR_p3ExVayEsRwyh8CqSSsuKCNpYVcUBrDn6JE6vEwDQm-a2mDAf3GoQCMnfuz1iez1qW1StK1XeFrFt4tJbJ_S8HWOqy4iUHvsiCnQhE-6JDmItcEB5M-vkmWzatEMIezbePBHQKNOwRdhhVjmXrqOT4OeOWi6Hi1SpDz5zSLHQf12Qc03-q_K3uJeVILdwtOdgGEyWzR2aoOw3R5eeUo6V5iRoM10tyyo5vWYSJbwQF-kBq9X8ohP4XSor_HqGzZarbrMbW8MAXPxiKjwe4k_MKkTHWTdZXDMo9IqAng2j120wU3JDTDm__pTpl3Jr5F9jLljQNgQ1InIQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >>> <https://secure-web.cisco.com/1Ccph9ZS_VfLjwevScUiM2zlDLl22OV5S1Qeou2nB7eCavcnOv1bSXZALcd3gx5Z1C8bcrD-Qp6yjtvY9P_QOXs1eL32N6PI0Eu8L4A24j-G3B5taI6T-PM-vX3eDuZilvElG_qFMXEaE2CxmvkFH6NJuxNOy6HIjVyKrlrn1jD-87qooS-qrtop3lGoj-x7pJOFAXa57Hgo-tNLIRN7DB7WC5Im1h_0oVlpptu4ASovvwPu6GHmvbVj6QUbLPNohJTumPyFKAkj2Juk4qjq5WAMNI92irx6YW4BW4X8wBS3hGRVuwqgvqqC1LTREXkPGGdjbbiy0rXR4PCUEasN5Dg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >>> The information in this e-mail is intended only for the person to whom >>> it is addressed. 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