Also see https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
On 10/27/2022 12:00 PM, Wighton, Paul wrote:
Hi Padma,
You can use the --like flag of mri_convert to convert the output of
the skull stripping back to the dimensions of the original file
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_convert
e.g
mri_convert --like input-to-skullstrip.mgz output-from-skullstrip.mgz
skullstripped_orig_dims.mgz
-Paul
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of priya padma
<pr...@phenomx.ai>
*Sent:* Thursday, October 27, 2022 3:05 AM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] change in mask size
External Email - Use Caution
Dear Team,
I tried using freesurfer for skull stripping and I got results all of
size 256X256X256 but the original data size is different, it's
512X512X537.
Is there any way to bring back the original size in freesurfer?
Any help would be appreciated.
Thank you
--
Best Regards
Padma Priya
/AI Developer /
/
/
/PhenoMx, Inc./
/pr...@phenomx.ai | (+82)10-5405-2685/
/
/
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