Also see https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
On 10/27/2022 12:00 PM, Wighton, Paul wrote:
Hi Padma,
You can use the --like flag of mri_convert to convert the output of
the skull stripping back to the dimensions of the original file
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_convert
e.g
mri_convert --like input-to-skullstrip.mgz output-from-skullstrip.mgz
skullstripped_orig_dims.mgz
-Paul
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of priya padma
<pr...@phenomx.ai>
*Sent:* Thursday, October 27, 2022 3:05 AM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] change in mask size
External Email - Use Caution
Dear Team,
I tried using freesurfer for skull stripping and I got results all of
size 256X256X256 but the original data size is different, it's
512X512X537.
Is there any way to bring back the original size in freesurfer?
Any help would be appreciated.
Thank you
--
Best Regards
Padma Priya
/AI Developer /
/
/
/PhenoMx, Inc./
/pr...@phenomx.ai | (+82)10-5405-2685/
/
/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.