External Email - Use Caution Difficult to enlarge your screenshots and read the text, but it looks like even though the output from the setup script displays the path to FREESSURFER_HOME, the script wrapper for the shell cannot verify that path actually exists. And it looks like you are using a “dot” directory named “.local” in your path for FREESURFER_HOME which is usually reserved for hidden subdirs in the shell. I would not name any subdirectory to begin with a "dot" for normal use with the shell, so try
$ mv .local local … reset FREESURFER_HOME, source the setup script again, and see if running the command works. - R. On Nov 15, 2022, at 19:59, Eric Yin <eric....@mail.utoronto.ca> wrote: External Email - Use Caution Hello! I’m trying to run the aparcstats2table function on a single participant and I cannot seem to get rid of the following segmentation fault error. I checked the forums and did not find anyone with the same problem. <9ECE8F5D2E7645A5962B55E842687C47.png> I have tried a few different options. First, I read that aparcstats2table requires PATH to lead to python2, but this call would throw the error that freesurfer has not been sourced properly even though I sourced it manually. Please find my Freesurfer version in the screenshot as well. I’m running on CentOS Linux v7 (Core). <4E289904EB384B21861CA9E16B7DD234.png> Then I thought that it might be because freesurfer/7.2.0 requires a newer version of python, but it also did not work for python3 or python3.6. <64B17BE84D1E4AFBBF7FFCE28ED15CD7..png> Please let me know if I’m doing something wrong, or if anyone has run into a similar issue. Thank you for your time._______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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