When you run selxavg3-sess, add the -svres flag. This will save the
residuals (ie, the time series without the nuisance variables)
On 11/24/2022 4:16 PM, std...@virgilio.it wrote:
External Email - Use Caution
Hi list,
I would extract the rs-fMRI time-series from spitted components of
Yeo's 7 Network Atlas (fsaverage5).
To this aim, I'm planning to convert the
"fmcpr.odd.sm0.fsaverage.lh.nii.gz" (obtained by preproc-sess) on
fsaverage5.
However, the fmcpr.odd.sm0.fsaverage.lh.nii.gz should still
include some nuisance variables (CSF, the white matter, motion, first
4 time points).
To address this issue, is it corrected to apply the command lines
reported below?
mkanalysis-sess -analysis fc.noseed.surf.lh -surface fsaverage lh
-fwhm 0 -notask -nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -polyfit 5
-nskip 4 -mcextreg -fsd rest -TR 1.67 -per-run -hpf 0.01 -lpf 0.1
-nowhiten
mkanalysis-sess -analysis fc.noseed.surf.rh -surface fsaverage rh
-fwhm 0 -notask -nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -polyfit 5
-nskip 4 -mcextreg -fsd rest -TR 1.67 -per-run -hpf 0.01 -lpf 0.1
-nowhiten
selxavg3-sess -s subj_folder_name -a fc.noseed.surf.lh -overwrite
-no-con-ok
selxavg3-sess -s subj_folder_name -a fc.noseed.surf.rh -overwrite
-no-con-ok
Thanks
Stefano
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