Please ignore the previous email. Apparently when I type the command it works but the issue is with using the gui
Reuben A. Get Outlook for iOS<https://aka.ms/o0ukef> ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Addison, Reuben <raddi...@mghihp.edu> Sent: Friday, December 16, 2022 10:02:56 AM To: fsbuild <fsbu...@contbay.com>; freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Freeview quit unexpectedly Thank you. I tried the steps and it worked once. Now I try opening the file and it keeps crushing The only file that opens now without crushing is “freeview $SUBJECTS_DIR/bert/mri/brain.mgz” Reuben A. From: fsbuild <fsbu...@contbay.com> Date: Thursday, December 15, 2022 at 12:14 AM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Cc: Addison, Reuben <raddi...@mghihp.edu> Subject: Re: [Freesurfer] Freeview quit unexpectedly External Email - Use Caution Please try the following: 1) Open a new terminal window and run the bash shell as, $ arch -arm64 /bin/bash 2) set FS_LICENSE to point to your license.txt file. Say it is in your home directory, e.g., $HOME/license.txt. It can be anywhere but you just have to set FS_LICENSE to its absolute path and test it can be read. $ ls $HOME/license.txt /Users/<your userid>/license.txt $ export FS_LICENSE=$HOME/license.txt $ head -1 $FS_LICENSE you@youremail.something<mailto:you@youremail.something> <— email you used to register with 3) setup the environment $ export FREESURFER_HOME=/Applications/freesurfer/7.3.2 $ source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-darwin-macOS-7.3.2-20220803-878457d -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/7.3.2 FSFAST_HOME /Applications/freesurfer/7.3.2/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/7.3.2/subjects MNI_DIR /Applications/freesurfer/7.3.2/mni 4) Try running freeview w/o any arguments to see if it opens an empty window. $ freeview 5) If that worked, quit freeview and then try running freeview to open one of the provided volumes in the 7.3.2 release, $ freeview $SUBJECTS_DIR/bert/mri/brain.mgz 5) If that worked, then try running freeview on your file again. - R.
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