Thank you.
I tried the steps and it worked once.
Now I try opening the file and it keeps crushing
The only file that opens now without crushing is “freeview
$SUBJECTS_DIR/bert/mri/brain.mgz”
Reuben A.
From: fsbuild <fsbu...@contbay.com>
Date: Thursday, December 15, 2022 at 12:14 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Cc: Addison, Reuben <raddi...@mghihp.edu>
Subject: Re: [Freesurfer] Freeview quit unexpectedly
External Email - Use Caution
Please try the following:
1) Open a new terminal window and run the bash shell as,
$ arch -arm64 /bin/bash
2) set FS_LICENSE to point to your license.txt file. Say it is in your home
directory, e.g., $HOME/license.txt. It can be anywhere but you just have to
set FS_LICENSE to its absolute path and test it can be read.
$ ls $HOME/license.txt
/Users/<your userid>/license.txt
$ export FS_LICENSE=$HOME/license.txt
$ head -1 $FS_LICENSE
you@youremail.something<mailto:you@youremail.something> <— email you used
to register with
3) setup the environment
$ export FREESURFER_HOME=/Applications/freesurfer/7.3.2
$ source $FREESURFER_HOME/SetUpFreeSurfer.sh
-------- freesurfer-darwin-macOS-7.3.2-20220803-878457d --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer/7.3.2
FSFAST_HOME /Applications/freesurfer/7.3.2/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/7.3.2/subjects
MNI_DIR /Applications/freesurfer/7.3.2/mni
4) Try running freeview w/o any arguments to see if it opens an empty window.
$ freeview
5) If that worked, quit freeview and then try running freeview to open one of
the provided volumes in the 7.3.2 release,
$ freeview $SUBJECTS_DIR/bert/mri/brain.mgz
5) If that worked, then try running freeview on your file again.
- R.
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