Hi,
It shows that T1.mgz is empty.
How did you run recon-all? Can you do ‘ls -l /Users/results/sub-101/mri/’? Can
you send recon-all.log in attachment? Does it work for your other subjects?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of tsengyuheng1...@gmail.com
Sent: Wednesday, March 15, 2023 8:31 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Freeview error
External Email - Use Caution
Hi Yujing,
It shows “-rw-rw-r-- 1 username staff 0 Mar 15 09:44 T1.mgz” and “error:
mghRead(/Users/results/sub-101/mri/T1.mgz, -1): read error”.
Best,
Y. Z.
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Huang, Yujing
<yhuan...@mgh.harvard.edu<mailto:yhuan...@mgh.harvard.edu>>
Date: Wednesday, March 15, 2023 at 20:17
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Freeview error
Hi,
Can you check if the path is correct? What does ‘ls -l
/Users/results/sub-101/mri/T1.mgz’ show?
If you do ‘mri_info /Users/results/sub-101/mri/T1.mgz’, does it report anything?
Best,
Yujing
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of tsengyuheng1...@gmail.com<mailto:tsengyuheng1...@gmail.com>
Sent: Tuesday, March 14, 2023 11:05 PM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Freeview error
External Email - Use Caution
Hi,
I met some errors when showing recon -all results in Freeview. I could not open
the brainmask.mgz or the T1.mgz via the terminal or Freeview GUI. But they
worked well with MRIcron. Could you please give me some advice on it?
The errors:
error: mghRead(/Users/results/sub-101/mri/T1.mgz, -1): read error
MRIread failed: Unable to read from /Users/results/sub-101/mri/T1.mgz
Thank you for the help!
Best,
Y. Z.
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