External Email - Use Caution        

Hi,
I checked the archive for any pointers about specific use instructions for
EasyReg and read the wiki page.
I would like to register three T1w acquisitions on three planes (Axial,
Cor, Sagittal).
This was my first attempt:
*mri_easyreg --ref [myimageAXIAL.nii]  --flo [myimageCOR] --ref_seg
[filename_tobecreate_seg_not_runpreviously]  --flo_seg
/[filename_tobecreate_seg_not_runpreviously] --ref_reg
/[filename_tobecreate]*

The command run and did generate the segmentation files but froze here:

Deforming and writing to disk

  Computing backward field

  Deforming reference image

  Saving deformed reference image
I could not find a log file.
Any suggestions? My plan was to use EasyReg on this registered image and
register it to the Saggital acquisition, but maybe there is a way to do
that registration at once?
thanks for any pointers and for putting together such amazing tools,
Fidel
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail. 

Reply via email to