It might not be a registration issue. When you look at the orig.mgz
compared to the rawavg.mgz, are parts of the head cut off in orig.mgz?
Can you send a pic of the head orientation?
On 3/17/2023 1:32 PM, Aaron Tanenbaum wrote:
External Email - Use Caution
We acquired some data this morning where the participant's head was in
an unusual orientation. The participant has cervical dystonia. I have
processed data like this before and freesurfer always fails. I am
assuming Freesurfer is unable to register the image. I have not even
run this image through freesurfer yet. Is there a way to deal with
this without altering the image?
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
