External Email - Use Caution Would it be possible to send us the surface and the overlay and mask files so I can replicate the issue?
Ruopeng On Apr 16, 2023, at 9:18 PM, Jewelia Karina Yao <jewelia...@stanford.edu<mailto:jewelia...@stanford.edu>> wrote: External Email - Use Caution Hi FreeSurfer Developers, I'm trying to use freeview to load the rh and lh inflated surfaces together with overlays and overlay masks. I'm able to this separately and successfully for each hemisphere, but when I try to load the hemispheres together, both of the overlay_mask files show up on the left hemisphere and not the right hemisphere. The following is the command I'm using: freeview -f ${SUBJECTS_DIR}/${SUBJECT}/surf/rh.inflated:curvature_method=binary:overlay=rh.phase.mgz:overlay_custom=1.57,153,0,0,2.20,255,0,0,2.83,255,255,0,3.46,0,255,255,4.08,0,0,255,4.71,0,0,102:overlay_threshold=1.57,4.71:overlay_color='clearlower','clearhigher',colorscale:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/rh.ve_20pct.thresh.label \ -f ${SUBJECTS_DIR}/${SUBJECT}/surf/lh.inflated:curvature_method=binary:overlay=lh.phase.mgz:overlay_custom=1.57,153,0,0,2.20,255,0,0,2.83,255,255,0,3.46,0,255,255,4.08,0,0,255,4.71,0,0,102:overlay_threshold=1.57,4.71:overlay_color='clearlower','clearhigher',colorscale:overlay_mask=${SUBJECTS_DIR}/${SUBJECT}/label/lh.ve_20pct.thresh.label I've tried running this with 7.1.1 and 7.2.0 on Mac 10.15.7 and Linux w/Ubuntu 22.04 but still run into the same issue. Let me know if there's something I'm missing or if there's a better way to troubleshoot. Thanks! Jewelia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://secure-web.cisco.com/1M-bm1dyk-sRi76ZNVWVJmJemXSvAgm3RjgAkuuq_OKi7AyKn43-8lQ7KiWhuCHz0w4YilNIR9iKI76PjsNNPhjqqA4sjXqf5GrAwTaVjAVetVOMxOJmVvZi3Ydh_cF4Dia5qLUJL8pexsW-p7FZPJWPAbKDbd7o0LkKgrdStAjeU_8284KobBlqy9_U6w50CA2nHKbGBVpGYizrgd6tbKYVWL1ledoFPd7IyY1zAT3N39tWXOFaBmQZjKtMD1-TTZ-KZ_HQP3vfOupnkzhRoGw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
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