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I don't know about recon-all-clinical, but you can get a decent
cerebellum seg with mri_synthseg. I don't think anything will give you
great GM/WM segmentation in cblum as that requires super high resolution.
On 5/15/2023 2:11 PM, Nathan Santana Schunk wrote:
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Sorry, I mistakenly sent the message without completing it, so, how I
was saying:
(I won't use these for clinical purposes, there can't be any concrete
conclusions based on this kind of data).
------------------------------------------------------------------------
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Nathan Santana
Schunk <nathansch...@hotmail.com>
*Sent:* Monday, May 15, 2023 2:54:26 PM
*To:* freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] Cerebellum + Subcortical models extraction
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Hi, I would like to know about the acquisitions of the cerebellum and
subcortical areas.
I ask if you, Freesurfer developers, could recommend any software
script that allows me to extract the cerebellum in a high enough
quality? Does Freesurfer offers the best known (by you) tool to do so
or does somewhere else has a more specialized script for this purpose?
Also, just to confirm, does the current recon-all_clinical register
all the subcortical areas? Or do I need to perform an specific command
to properly get them?
I want to connect all the intracranial neuro matter (Cortex +
Subcortical area + cerebellum) in a single volume, for this purpose I
pretend to place the structures in the exact coordinates they're
supposed to be, according to each other positions. If there's any
suggestion on how I could do it accuratelly, I ask for your assistance.
One last thing, could you inform me of the existence of programs that
allows me to analyse my brain data, and through that get outputs
showing me possible indications? (I won't use these for clinical
purposes, these won't I search for that and
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