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I'm wondering the Freesurfer version you are using.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas
Sent: Tuesday, May 30, 2023 8:22 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Smoothing with surf2surf
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Hi
I have been attempting to perform just the smoothing step on a series of
subjects using surf2surf and I seem to be getting an error when attempting to
this.
My command is as follows
mri_surf2surf --hemi lh \
--s fsaverage \
--sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \
--fwhm 10 \
--cortex \
--tval combatlh.thickness.fwhm10.fsaverage.mgh
I get this error
ERROR: Option --sval unknown
Based on other posts on the mailing list I tried specifying the src and trg
subjects but still receive the following error:
mri_surf2surf --hemi lh \ --srcsubject fsaverage \
--srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \
--trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh
ERROR: Option --srcsubject unknown
I was wondering if you might be able to help resolve this issue
Thank you very much!
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