External Email - Use Caution
I ran the following as an example:
mri_segstats --seg
/Users/andrewgeoly/Desktop/Stanford_BSL/TBI/Structural_Analysis/BIDS_data/ses-V2_reconall_clin/sub-54095s001/mri/aseg.mgz
--ctab /Applications/freesurfer/7.4.0/FreeSurferColorLUT.txt --nonempty
--excludeid 0 --sum
/Users/andrewgeoly/Desktop/Stanford_BSL/TBI/Structural_Analysis/BIDS_data/ses-V2_reconall_clin/sub-54095s001/stats/aseg.stats
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Huang, Yujing
<yhuan...@mgh.harvard.edu>
Sent: Tuesday, July 18, 2023 9:40 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] WM Hypointensities
External Email - Use Caution
Hi Andrew,
I can’t answer if wm-hypointensity is supported in recon-all-clinical. I’m
assuming that you obtained aseg.stats by running mri_segstats. How does your
command look like?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Andrew Dedinas Geoly
Sent: Tuesday, July 18, 2023 11:44 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] WM Hypointensities
External Email - Use Caution
Hi Freesurfer experts!
I am hoping to extract the wm-hypointensity data from some recon-all-clinical
runs. I was able to extract aseg.stats information correctly but noticed there
was no information regarding the wm-hypointensities.
Is this supported by recon-all-clinical?
Best,
Andrew
---
Andrew D. Geoly, MS
Research Data Analyst 1
Brain Stimulation Lab
Department of Psychiatry and Behavioral Sciences
Stanford University School of Medicine
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