External Email - Use Caution Dear Douglas, thank you for the reply. I am attaching it here. I usually create it (using BASH) as such: << echo “1 -1” > File_Name.mtx and have never had issues, however I have not used "[ ] " on my contrasts before... Thank you so so much for your willingness to help and your time!
On Wed, Nov 15, 2023 at 6:47 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > Can you send > /data/Ghana_MRI_Data_lmid/StructT1/subjDir_FS_GHANA/Contrasts/GM_FM_ONE_minus_ZERO.mtx > ? > How did you create this file? A lot of word processors will add special > characters that can cause a read failure. > > On 11/9/2023 12:33 PM, Ludmila Midrigan wrote: > > External Email - Use Caution > Hi Douglas, > Thank you for your reply. > Yes, find attached the fsgd file, the contrast is [1 1 1 -1 -1 -1 0 0 0 > 0]/3 > As well as the code I am running and the whole output from the terminal. > > Thank you so much for your help! > > On Thu, Nov 9, 2023 at 6:35 AM Douglas N. Greve <dgr...@mgh.harvard.edu> > wrote: > >> Can you send the command line, all the terminal output, and your fsgd >> file? >> >> On 11/3/2023 11:51 AM, Ludmila Midrigan wrote: >> >> External Email - Use Caution >> Hi dear FS experts, >> I am having issues with ( I am assuming) the design matrix for my GM >> analysis. >> I am getting the error: >> >> "error: MatrixReadTxT: could not scan value [1][1] >> ERROR: loading C Path_to_contrast" >> >> I am only interested in a difference for Group ONE - Group ZERO; >> I am trying to run a DOSS ( with three groups and 4 nuisance covariates) >> my contrast is : >> [1 1 1 -1 -1 -1 0 0 0 0]/3 >> >> I have standardized all variables. >> Attached is the FSGD.xlxs file ( that I did transform into a .fsgd file) >> Please let me know what I'm doing wrong. >> Thank you so much! >> >> >> *milly mc * >> >> >> *"Life is a foreign language; all mispronounce it." * >> *Christopher Morley* >> >> _______________________________________________ >> Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu*MailScanner has >> detected a possible fraud attempt from "secure-web.cisco.com" claiming to >> be* >> https://secure-web.cisco.com/1EhS5mLd3vSAmlNCDxtorEp_PeqLi4Tso1tegCTjVmHIkFsCvmpc18iiEzgeQNf9AS3M-AMsRo0xjwNH3KA7XlBD0KHsMHt9lXtO865ZVkO7Br7OB24pS2ksq-MpW4AgM--LF_QPf6VRs0re8RIpqxrmb5iFdjIXQVCItJ6WLFA7EdNM8OtuJ5xhGLYwoUfp6aq8p4lr-As4vv9HHZY3V3smv3YgxZIVc4yTYb5BnThnXKsDNZUHn3RKeKv4WXj-Akrcsp3wEe6AoJkCuvX_H_IEVEfuPrZtaS6opx1D5HN9N1xgtm2PXD1nplGc1aKIA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> >> <https://secure-web.cisco.com/15w19HcLKdD4B1_vBlmcXD4oL-M6RdXn_F2Thv6otUqOC9Nj_WEM-KvcS3aSGnoPNXyCu4hoH188ynCVzpYkzfbYZBPcFTwh9xqg2HvCMJkt3WjanO6QvVaz0tIwF8_ZWGa4PgK5KGjwyzFwFkXqOnaSRT1QdZWER4ngYUo4rKVUawKgCZtBSj0tUDmR8R_6ykcQYHvlZmEe8pa8Nk-4-C4sN7toLTgiMCXsci03VxIAxV2x9LhMnwC21vfPMvNr4o8CmZZxPkO4ZCdzNzteI_q9Dnm5cUsuiKUKhqPIFotTolbILGxhT6ur14yaojlHUTthPcdFGxVNqt7CL9r4KcA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1EhS5mLd3vSAmlNCDxtorEp_PeqLi4Tso1tegCTjVmHIkFsCvmpc18iiEzgeQNf9AS3M-AMsRo0xjwNH3KA7XlBD0KHsMHt9lXtO865ZVkO7Br7OB24pS2ksq-MpW4AgM--LF_QPf6VRs0re8RIpqxrmb5iFdjIXQVCItJ6WLFA7EdNM8OtuJ5xhGLYwoUfp6aq8p4lr-As4vv9HHZY3V3smv3YgxZIVc4yTYb5BnThnXKsDNZUHn3RKeKv4WXj-Akrcsp3wEe6AoJkCuvX_H_IEVEfuPrZtaS6opx1D5HN9N1xgtm2PXD1nplGc1aKIA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> <https://secure-web.cisco.com/15w19HcLKdD4B1_vBlmcXD4oL-M6RdXn_F2Thv6otUqOC9Nj_WEM-KvcS3aSGnoPNXyCu4hoH188ynCVzpYkzfbYZBPcFTwh9xqg2HvCMJkt3WjanO6QvVaz0tIwF8_ZWGa4PgK5KGjwyzFwFkXqOnaSRT1QdZWER4ngYUo4rKVUawKgCZtBSj0tUDmR8R_6ykcQYHvlZmEe8pa8Nk-4-C4sN7toLTgiMCXsci03VxIAxV2x9LhMnwC21vfPMvNr4o8CmZZxPkO4ZCdzNzteI_q9Dnm5cUsuiKUKhqPIFotTolbILGxhT6ur14yaojlHUTthPcdFGxVNqt7CL9r4KcA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> The information in this e-mail is intended only for the person to whom it >> is addressed. 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Continuing to send or respond to >> e-mail after receiving this message means you understand and accept this >> risk and wish to continue to communicate over unencrypted e-mail. >> > > > -- > *milly mc * > > > *"Life is a foreign language; all mispronounce it." * > *Christopher Morley* > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1EhS5mLd3vSAmlNCDxtorEp_PeqLi4Tso1tegCTjVmHIkFsCvmpc18iiEzgeQNf9AS3M-AMsRo0xjwNH3KA7XlBD0KHsMHt9lXtO865ZVkO7Br7OB24pS2ksq-MpW4AgM--LF_QPf6VRs0re8RIpqxrmb5iFdjIXQVCItJ6WLFA7EdNM8OtuJ5xhGLYwoUfp6aq8p4lr-As4vv9HHZY3V3smv3YgxZIVc4yTYb5BnThnXKsDNZUHn3RKeKv4WXj-Akrcsp3wEe6AoJkCuvX_H_IEVEfuPrZtaS6opx1D5HN9N1xgtm2PXD1nplGc1aKIA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. 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If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > -- *milly mc * *"Life is a foreign language; all mispronounce it." * *Christopher Morley*
GM_FM_ONE_minus_ZERO.mtx
Description: Binary data
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
