External Email - Use Caution Hi, Yujing
Thank you for reply. It is likely that the version of freesurfer is different. The latest version (7.4.1) output results based on three atlases. https://secure-web.cisco.com/16kyFKZBTTmJxzWlCpHckTWKfW7NeWPN9nduq80zrB4veUgSnqf_Yxf0V4hYrnX-id0bCIWJ9Wu0QjhaC8hGFsvw5fF7iKqEES2iLMyOuqfEuZ-rCPST4Q2uOFdH4SHYh9FXjbp07AstFZ_m_bljkfF7Sw-5BNFgi6ZMtRPb1vXwm1_ADDTJg59U4PKul_eb1xIhJJKpj9VYPCyOQ39gtP_aWXimwq3FgleENUQFx354be1rUU5sVizr9GuCBxDGaaKVW7wGycCcxIwTSjBdBnJAORnbTvvTP_QKN5-83GSW9IGPf9DyxK2vphprk2JiT/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FCorticalParcellation Thanks, Kei ________________________________ 差出人: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> が Huang, Yujing <yhuan...@mgh.harvard.edu> の代理で送信 送信日?: 2023年11月21日 10:52 宛先: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> 件名: Re: [Freesurfer] How many regions does "aparc.DKTatlas+aseg.mgz" have? External Email - Use Caution Hi Kei, Here is my calculation: 198 aparc.a2005s+aseg.mgz 192 aparc.a2009s+aseg.mgz 114 aparc+aseg.mgz I can’t find aparc.DKTatlas+aseg.mgz in Freesurfer distribution directory. Is it the same as aparc+aseg.mgz? Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Kei Nishimaki Sent: Monday, November 20, 2023 5:57 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] How many regions does "aparc.DKTatlas+aseg.mgz" have? External Email - Use Caution Hello FreeSurfer Developers, We ran recon-all on a 3D T1-weighted image, by default. ls *.nii | parallel -?jobs 2 recon-all -s {.} -i {} -all -qcache Our question is very simple. How many regions does "aparc+aseg.mgz" and "aparc.DKTatlas+aseg.mgz" and "aparc.a2009s+aseg.mgz" have in each? We checked the links below. And we want to renumber the region index from 0 as shown in the photo below. MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/132WvSeoaXEyy8CpFxjt9yVSLNRqcdk9XlE2pYSq33zz-bhyMysIClm-j16YORa2NekqiwQAGu-1-E5zUjkrIxWYDd3omIDUlJuSYMA7ZD6mgF10J_O1yJIvsptQldRmqgHpbZrw3MqeY5JWaASlT8VJ_Ej3O1000u3sxSisUgcb8S9PVHh9pq9hTMLZ5ulbGl0xtRa0VQ5DYVHlVA7A5k47TY60nkKToKMzFF2AvOOqhGwfnjwxw2y1H65_KeTxzb-0b1JiYyFv86F42t8Ve75tG2Hu9mlfTPhqEGwdtBZNKP3yRnYpOxXQgJmDElUXI/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FAnatomicalROI%2FFreeSurferColorLUT<https://secure-web.cisco.com/1fBJMEihMTm8S1YZKy0FxnEoJxLOAxKaZC0-l90ulKxJmiTJlTMxY3q3ryv_7ts1uTTCPQdTCOXuEDbwL3_YFKQ9x83aJYfbcz7J81AdtRga---yQ-peSn5Fsu8zcLmGfTkyEBLwe7jTpR76XJKk8WD2KrGzdLzn-OGCPsb6KrE26Sry5Xtdonatr3zpx1586ZVun-Dfymo1VrwMbfxb50BE9Jrg_eO4NI1aY2u0E2Gb7sy0Z297RPfygrH9Q30T_pzzmgkx2eR0deWv8TDMkcMYeNHWrmhhENpTODcS5c85PLV66Hz7SIC-1D62zGk2eaK5kt2QcMtZN59t4JRmmXw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FAnatomicalROI%2FFreeSurferColorLUT> However, the number of regions varies slightly depending on the subjects (103~106 in aparc.DKTatlas+aseg.mgz). Therefore, we want to know the number of regions in three parcellation map. 1) FreeSurfer version: freesurfer-linux-ubuntu20_amd64-7.4.1.tar.gz 2) Linux ~~~ 5.15.0-76-generic #83~20.04.1-Ubuntu SMP Wed Jun 21 20:23:31 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux [cid:image001.png@01DA1C68.536FE6F0] Thanks, Kei
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
