External Email - Use Caution If you do a case insensitive search for the string “error" in the log, you should see there are multiple listings of, IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 4 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCES out of QuasiNewtonEMA: 008: -log(p) = -0..0 tol 0.000010 This thread indicates it could be the skull stripping is not right, and should be checked,https://secure-web.cisco.com/1diiACwYbRU5h086AYSNGiqllYdOKITn3ySdC0K_QfnQR43A65qvLhyBqoue0bb2EIdQri_zKECQVz7Dg4n1y-KrqVKkY42kR7NxqLvFqeNGpT_LHmzYmFbyZcQarr8vTSInFpkA8dw2kifIJW092CogIViPRD29ux9nSFCHAFM-MjYDP7OR8RXAbFeqv5t3P9Y-GN-S8ou2NsWtfrhciLxc_rGRla71oL66AX4Rz8RTgJfYAKgsKItsVgU7_Ze_slOiVIeiN7awFuPLq1-2OpvYI9KsK-zyirB09oD4IW93nqNnKkerwb2Pkf2KVDYAm7eHdn_m0AZbg71elbxK9Cf3csOj7VWnmzRjt2G8KtiE/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg16992.html- R.
On Jan 6, 2024, at 01:10, yunus soleymani <soleymani.yu...@yahoo.com> wrote: External Email - Use Caution Hi Fargol,I recently heard about some problems from my coworkers who were using Ubuntu 18 and version 7.2.0 of the software. However, I am currently using version 7.2.0 on Ubuntu 22.04.2 LTS, and it works well for me. You could try it out and see if it works for you as well.bests,Yunus--------------------------------------------------------------------------------Yunus SoleymaniPh.D. Candidate of Neuroimaging Tehran University of Medical SciencesMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be soleymani.yu...@yahoo.com+98 914 526 9298--------------------------------------------------------------------------------On Friday, January 5, 2024 at 10:05:54 PM GMT+3:30, Fargol Rezayaraghi <far...@uw.edu> wrote: External Email - Use Caution Hi FreeSurfer Team,I hope this email finds you well. I'm trying to use a T1 image to get the aparc+aseg and wmparc nifti files. I was using this command: recon-all -s Subject1 -i T1.nii - all -notal -check ( I used recon-all -s Subject1 -i T1.nii - all first, and after getting Talairach error, I added -nota -check at the end).I'm getting the following messages without a clear error number: recon-all -s Subject1 exited with ERRORS at Thu Dec 14 21:18:02 EST 2023For more details, see the log file /home/developer/Desktop/freesurfer/7.2.0/subjects/Subject1/scripts/recon-all.logTo report a problem, see MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1n6sdsWRV3TG8Jv2QrC7lr2OJkNo-vKWiVDfRMiE5lmXlfr-lokdvEt9eU6rLlP-aYqMbpq7K8EuAFgyM-6sO89wlS6SQyFVjfDrM7snkFk50KWtPcMrrMAb3-iDx3BvJzlzmHyj0ZOND6no-rksYRz4xSsFBN_9UnfKugJxeNypP2Hj8p3ohnddEIIXWWJiwXHUvl-q6ed-l--DVxtJuq-0q9GLNGkXfHafyVqJT-wYiKqyqa3_LTDndGHBRYVVjR3aNR8Yk5kzhAcfQ0V0xCnJghGvzLYBDnRmqqZBH_M2E4IbsaoFhxLjF6uz4KQphy-hq0G_fy4qWkLWvQOq0djR1FPNjJvPOTe0nl7LLpnQ/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReportingThe version of the freesurfer: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76bMy platform is ubuntu 18_04_06 on Oracle VM VirtualBoxI've attached the log file. -- Kind Regards,Fargol R. Araghi (Rezayaraghi)Ph.D. Candidate, University of WashingtonDepartment of Mechanical EngineeringMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1MEbXNSnnv7NT1-4EzMYIfzctR98Iydj5J9JFwfH6Kv4xQ8RFYfNZ1-FLbFY0LR3b3gAbNVf39J834yCGuuDieCRxVv1PmsclTDaUtIvP9xcuHXFNd3SI-5JWP3t7QoQkPVjBDfSl5aO2ssQJ5uTSQybV2BUdc8ImY7AORL9Uz2P62vMPbegb42qe9ykB-sRrI0L5Hvjhaz6KWK9d3ewR-i9h-qytWo2MEFrrNCV3gMkYtzs5vPDIbtVNkBf9JFTVQSqFvD9o_KKDometmdLv2vgp7eHtjAswPZt6Q3W2L65Ckz2jrmXX5dknJ2nl0Dj59QdWnEGE7b-W4jR72W2lAXrMCnGVGRbuGml8G5qazXk/http%3A%2F%2Fwww.Kurtlab.com_______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1WLCgxPTXYmh2RXigsOXigGsIv-l-w5--kmcWP7kJObpHK9FXDq21o77qYl9AdDoGYEMxmuChf5AsdOpFr7I_LXXSl76fU-0LyWdSqeH_-GvoheZqN03QMF1E0hft-_ekH5QoEVLy42dlXU6lVHaw8GY-c3DU9kORjDVikyNoC-Sb55ubuw-wU9vEwnCAYIQyFKVvH7ktgJVubEBKURHckywY9-spiCuXt_Q58gxdP0Dc1mGkENS8luwjGCmVP9DBMCNJbI_el1sVc2OBXaZgGnUKDB6G2sCJ0Dz4S6TQpzTNBnpiFU0OWHE9qIB5xe--wbXX8jTEm0nRIzTLgNM5zQbgCYfkM-5CwOvEQR-rwKs/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer_______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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