You can try using mri_synthseg --i orig.mgz --o synthseg.mgz
it generally does a better job on cerebellum than the native FS command
On 1/5/2024 4:11 PM, Carlos Alcocer wrote:
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Hello,
Inferior portion of cerebellum are not segmented well. It is included
in skullstrip and I tried adding control points in cerebellar WM but
this did not help. I am not interested in cerebellum but I do need
eTIV. Will this poor cerebellar segmentation affect eTIV calculation?
Thank you,
Carlos
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