If you can program, then write a script with a loop
On 1/12/2024 5:41 PM, ERNEST KISSI wrote:
External Email - Use Caution
Thanks,I have been able to fix the problem. But is there a way to run
multiple samples at a time on windows? Because I have over 50 images
to process.
On Sat, Jan 13, 2024, 12:31 AM Douglas N. Greve
<dgr...@mgh.harvard.edu> wrote:
That is the bbregister command. You should look at the output of
recon-all
On 1/11/2024 5:37 PM, ERNEST KISSI wrote:
External Email - Use Caution
This what the output shows doing the bbregister.
image.png
On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD
<bfis...@mgh.harvard.edu> wrote:
A T1-weighted FLASH should work. When you say “it did not
work” what do you mean? Can you give us some details?
Cheers
Bruce
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of
*ERNEST KISSI
*Sent:* Thursday, January 11, 2024 3:54 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* [Freesurfer] Registration of MPF to FLASH 3D image
* External Email - Use Caution *
Dear Freesurfer team,
I messaged the team on my MPF map analysis and a suggestion
was made that I register the MPF maps on the T1 MPRAGE
images. However, I did not acquire MPRAGE but FLASH images.
Can I used those instead ? Again, I tried even using only
the T1 FLASH images and it did not work so I am not sure
whether the registration of the MPF maps on it will work or
not. Is there anyway around this?
Thank you.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://secure-web.cisco.com/1jckhvpTrSA73ODmCVtEoybTAhNZdfCcRmPbeHhB_NHGE-EQGO6D8yCM9KNJ72_VNnpyXAzlLxslZq01nhND42LequdcbueYPdCgxnlIG5lcyeaawoft4N1DEm_6emSmT_EOs5j7SvD6SvZb2JHT5jR4MQWyQ7n7S9bJEAzlP30Iw8Zi-3yZEa85iRw2Lhc7BofSJQM2yEtfNBFwyZaPxIx0Assbl1Cy02Vw8h_JJz6HUlSltqNK926AOqLsPUMNqTbRPAgV5eRhy4TOc8gVAV89e9zmkrY2CSuZTj62CmNJCtyDA5drAa8oObOV9acmK/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
The information in this e-mail is intended only for the
person to whom it is addressed. If you believe this e-mail
was sent to you in error and the e-mail contains patient
information, please contact the Mass General Brigham
Compliance HelpLine at *MailScanner has detected a possible
fraud attempt from "secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
<*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>>
.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://secure-web.cisco.com/1zTrE3LbyM-s8DytG8EKabySVjAS8tgnDzx6K5lpLFxQzgmv3kkYDF2lBftilD3ln6stHd-QjltjNQE0rYsuQGJ2zP_6rxsmOjNZA6uQ5csSiPPA4fUMPn0J9O8e_OWO258DseoOetiuhbOKkfc4PjDGWjcL66yfdZP4vpPuIv3IFR5-32KB7ueMeYUx8gihMevYeIfPHxXLpNv8KEANJZLQr35wQf6aajTrsEtuPVPQNHdzpzsV7OgWFREUC4az1piLc2zvA6-7kQ0KG0R0ga9HjC9nPrwt-S5eFnTBnQGGOcNOfdm4fB8oRpmEdZ7O9/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://secure-web.cisco.com/1zTrE3LbyM-s8DytG8EKabySVjAS8tgnDzx6K5lpLFxQzgmv3kkYDF2lBftilD3ln6stHd-QjltjNQE0rYsuQGJ2zP_6rxsmOjNZA6uQ5csSiPPA4fUMPn0J9O8e_OWO258DseoOetiuhbOKkfc4PjDGWjcL66yfdZP4vpPuIv3IFR5-32KB7ueMeYUx8gihMevYeIfPHxXLpNv8KEANJZLQr35wQf6aajTrsEtuPVPQNHdzpzsV7OgWFREUC4az1piLc2zvA6-7kQ0KG0R0ga9HjC9nPrwt-S5eFnTBnQGGOcNOfdm4fB8oRpmEdZ7O9/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>
The information in this e-mail is intended only for the person to
whom it is addressed. If you believe this e-mail was sent to you
in error and the e-mail contains patient information, please
contact the Mass General Brigham Compliance HelpLine at
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1I667QcMFy_OBc_hulxN6sUX7aK7PGmSj-RZ8kSHvja4pvVUSJ9kYoEIv0y0ZwTdx0X20DyoOFyQzOAldPOgCw_ZDCHxbkHAVwjvq8dmYne5Emsr3tm0PcWks6B6Jxqrd56VtmcnNwX4WYLTmVeRlNv1oy3S8qVlblmmVa_-zJZ-QN6xNSrMKwrmseLo0uADu4a0Gzx9dllFTHyq-Xkb_4o2kNmPq2fOWIQ1xYks3G0K15CjPNWIJmq3LV8krQ-dDXCarrd48YXN7K1Dq9EugtJkNJbxU7kiTQkDi2kJ7ah3wnZ4JeqX-x0RHzQ3v_-qm/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
<*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1I667QcMFy_OBc_hulxN6sUX7aK7PGmSj-RZ8kSHvja4pvVUSJ9kYoEIv0y0ZwTdx0X20DyoOFyQzOAldPOgCw_ZDCHxbkHAVwjvq8dmYne5Emsr3tm0PcWks6B6Jxqrd56VtmcnNwX4WYLTmVeRlNv1oy3S8qVlblmmVa_-zJZ-QN6xNSrMKwrmseLo0uADu4a0Gzx9dllFTHyq-Xkb_4o2kNmPq2fOWIQ1xYks3G0K15CjPNWIJmq3LV8krQ-dDXCarrd48YXN7K1Dq9EugtJkNJbxU7kiTQkDi2kJ7ah3wnZ4JeqX-x0RHzQ3v_-qm/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>>
.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
