I would also be helpful to have some pics of what you are seeing. The
surface is not valid in the "medial well" -- ie all the non-cortical
structures on the central sagittial plane such as thalamus an VDC.
On 1/16/2024 7:50 AM, Huang, Yujing wrote:
Can you try the troubleshooting methods from this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingData
Best,
Yujing
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Sunniva Fenn-Moltu
*Sent:* Monday, January 15, 2024 6:35 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* [Freesurfer] Midline white/pial surface
* External Email - Use Caution *
Hi,
i'm running recon-all and have encountered an issue with the surface
boundaries on several subjects. What I'm experiencing is that the
midline surface is included in the white surface in one hemisphere,
and in the pial surface on the other hemisphere. This results in the
midline boundary of the thalamus and ventral DC being white surface in
one hemisphere, and pial surface in the other. Do you have any idea
why this is happening?
I am running freesurfer on NoMachine (freesurfer/7.4.1).
Best,
Sunniva
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