External Email - Use Caution The recon-all log contains this entry, ERROR: mpr2mni305 failed, see transforms/talairach_avi.log If you go to where that log file is, which I think would be, $ cd $SUBJECTS_DIR/mri/transforms … then look in that log file to see what the error is. It is usually at the end of the log file. - R.
On Feb 9, 2024, at 07:16, Francesco Lomi <francesco.l...@unifi.it> wrote: External Email - Use Caution Unfortunately I've tried to change the directory but I've encountered the same error, as shown in the log file. Best,FrancescoIl giorno gio 8 feb 2024 alle ore 17:59 Huang, Yujing <yhuan...@mgh.harvard.edu> ha scritto:This is from your recon-all.log: “setenv SUBJECTS_DIR /home/ubuntu/freesurfer/subjectsFREESURFER_HOME /home/ubuntu/freesurferActual FREESURFER_HOME /home/ubuntu/Freesurfer“Your SUBJECTS_DIR points to your Freesurfer install directory - /home/ubuntu/freesurfer/subjects. I’m not sure if this is the reason for the failure. But it is a good idea to set SUBJECTS_DIR to some other directory where you have write permissions. Can you re-set SUBJECTS_DIR and try again? Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Francesco LomiSent: Thursday, February 8, 2024 11:44 AMTo: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Subject: Re: [Freesurfer] mpr2mni305 failed External Email - Use Caution Yes, sure. This is the fileThanks. Il giorno gio 8 feb 2024 alle ore 17:03 Huang, Yujing <yhuan...@mgh.harvard.edu> ha scritto:Can you re-send recon-all.log as attachment? From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Francesco LomiSent: Thursday, February 8, 2024 10:58 AMTo: freesur...@nmr.mgh.harvard.eduSubject: [Freesurfer] mpr2mni305 failed External Email - Use Caution Hello everybody, I'm new on Freesurfer and I've installed the software on my Ubuntu 20.04 machine. The installation should be fine. just tried to run recon-all on my subject data but i got stuck on the following error you can see on the screenshot: <image001.png> Any idea on how to fix this?Thank you in advance Best,Francesco_______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1XbsZgwTnI3onjdYJVFjoCKwtbD8UOXL2chYPXyZAPt9Lp3eMX9vyw40TUvskG4dYYkm2a_i5GuY1eCxRlu-mfonDPnSeXcAzNR-GZPnBfEVQZHquR8lKVpFOlFewKsO_X2LVEZNCFWF2GvofOcyDZCHKuaau8ii59MRzU16AracbZCydu2OzREp9Fzga1x-4s4FugvWLSJT13nsCDuxyFhJjI6XiLDfvpQDezEvUs8cAGdlxwbF1OgwxW_uWZj0t7n8645RpoR0dYGaE3em4IsiK8xd21K-syRY3hmKMpr7mh1-sHn8OiLAzzqaS6Pngsj_1Swi77LJ2rlwsn3gqoQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2FfreesurferThe information in this e-mail is intended only for the person to whom it is addressed. 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If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail._______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1XbsZgwTnI3onjdYJVFjoCKwtbD8UOXL2chYPXyZAPt9Lp3eMX9vyw40TUvskG4dYYkm2a_i5GuY1eCxRlu-mfonDPnSeXcAzNR-GZPnBfEVQZHquR8lKVpFOlFewKsO_X2LVEZNCFWF2GvofOcyDZCHKuaau8ii59MRzU16AracbZCydu2OzREp9Fzga1x-4s4FugvWLSJT13nsCDuxyFhJjI6XiLDfvpQDezEvUs8cAGdlxwbF1OgwxW_uWZj0t7n8645RpoR0dYGaE3em4IsiK8xd21K-syRY3hmKMpr7mh1-sHn8OiLAzzqaS6Pngsj_1Swi77LJ2rlwsn3gqoQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2FfreesurferThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1AWr9-RI-XVYXogeF7gwubnfYP8OHUBQfXOW1xkbCfUaChH1R4IH5fZI2v1ZYLsdFTDE0fR9uKUOHlAXQvkG_kNzEx0Gc5ZoNFEaMhFlkWl7FB4tfo6IFOvN56vC7FR0n5K3UjPdQV9vnwNYr7SUmrg9nYPhjInMJc8QZGtcWfw7yk4hAzFzaN9Ut91RYTZtfObHnna7oGsJYpHcvhrYIu8QVaXe04I6qR8LfNCmP2oehk6feF0ybTM8Y3TuxPffP9OefcorJGniJpuKjmO6pg4Y34aiQPYMKku7rILafn1eqgju48ysr0FCBsj21oJbBtPDvpOSsiFkVVmmGtPLLxw/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline%26nbsp;<MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1PLDGVmlJ15D7C2mdizQggSFTGmzd-UMuECjkevHSbETlfEaCOSI_1tUiPdsPQtYX9zca2M1Dnu-n6G8UAWg3l1tYPuUrpHUlpuFz_98CGfhjtVxeklLg9U4DucZ1UMDHK0nJqAJouoomcEoF7RVpE8WqkPBHYD7-W-ryskrr9WXhifcdtsGXa1cAyYndP4UbHWuiF4SHvcwZf93k1aWsRRt4zTd2zJvGkjlN51iO1gCQTaov5AtNG9DX5RN6HVBByr7rWP481B27JbCNfayEyo0Dg-x-uv4KzX83l8E4sjEvvsgFM6lk2vg6LQqkf2N4iXpRQzT70LwQOry1Pcw2zQ/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline%26gt; .Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. <recon-all.log>_______________________________________________Freesurfer mailing listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
