Can you send pictures of the slices showing the problem?
On 3/3/2024 3:18 PM, Stanica, Maria wrote:
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Hello FS developers,
I ran my subjects through skullstripping and recon-all. Everything
processed correctly (and exited without errors), except 4 images which
have an underestimation in coronal subcortical region. The
underestimation is significant and goes on for about 10-12 slices (for
one image it was 153-162, for another it was 150-164).
After searching the list, we attempted control points, which ended up
not working (I don’t believe this was the right method to correct the
error). Then we tried white matter edits, and one of the images was
resolved, but the other 3 did not get better. Is there anything else
we could do to try to resolve the issue? I can provide any other
information needed. Any help would be appreciated!
1. Freesurfer version: FreeSurfer/7.1.1-centos7_x86_64
2. Operating System: Red Hat Enterprise Linux 7
3. OS Version: 7.9 (Maipo)
Best,
Maria
*Maria St**ǎ**nic**ǎ**, B.A.****| **Graduate Student*
Medical/Clinical Psychology Doctoral Program
UAB |/The University of Alabama at Birmingham/
mstan...@uab.edu <mailto:mstan...@uab.edu>
Pronouns: she/her/hers
Image
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