Hi Antoine,
I would guess this is a memory issue. You could try allocating more and/or look
at the exit code. I believe 137 would indicate that Python ran out of memory.
Malte
________________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Antoine Royer
<antoine.ro...@usherbrooke.ca>
Sent: Thursday, April 11, 2024 16:21
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_synthmorph
External Email - Use Caution
Hi,
I am developping a Nextflow DSL2 module through nf-core for registration using
mri_synthmorph, through the dockerised version:
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com"
claiming to be
https://hub.docker.com/r/freesurfer/synthmorph<https://secure-web.cisco.com/1F0tLsgl5mSp6FHNJceZtb0_zJW26GZiSS0O_W7cYXg5eO4k5Y4IO_yTbNoM7nfomidDPGAXjnzDCPm1UkTtOSiMK4V-oxH_U0ANMcn0FaJWjIAMW5hs8czh3EagsX2LcanlrE3nXRXmRcgiSes0j0Cfn1CkR7VUMV8nkYvpgECTfe6Nmm0VmloYUv0dk-GakSQqBqy0mJcLZ2swdnvwcb73E8jMH85qEMn4ERtLq_NApLHeeeMXvaDLoQC3b-rj2RfwLGFbrRHPt9SF_aBgFjut9dHd7vvdkVZhJEMQ6ttbyU_40e3K2YlcWllOCb1fM/https%3A%2F%2Fhub.docker.com%2Fr%2Ffreesurfer%2Fsynthmorph>
Here is a couple of screenshots showing the ressource consumption of my
computer and through Docker.
I don't have any issue running it locally, but there seems to be an issue
through my container which is set at 16 core at 24 GB. Does anyone have any
insight on how to troubleshoot this?
Thank you!
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