Mostly these:
https://pubmed.ncbi.nlm.nih.gov/15501102/
https://doi.org/10.1016/S0896-6273(02)00569-X
For a separate fornix seg, see
https://surfer.nmr.mgh.harvard.edu/fswiki/ScLimbic
On 5/22/2024 1:34 PM, Ahsan Ali wrote:
External Email - Use Caution
Hello everyone,
Could anyone please help me to know which Atlas is used in the
segmentation of corpus callosum, hippocampus, and fornix using
freeSurfer from Brian MR images. I have gone through the literature
but couldn't find it.
With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics (Biomedical Engineering Group)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552
---------- Forwarded message ---------
From: *Fischl, Bruce R.,PHD* <bfis...@mgh.harvard.edu>
Date: Wed, May 22, 2024, 10:52 PM
Subject: RE: Atlas Used in FreeSurfer for Segmentation of Fornix,
Corpus Callosum, Hippocampus
To: Ahsan Ali <ahsan889...@gmail.com>
Can you please post to the list so that others can answer?
*From:*Ahsan Ali <ahsan889...@gmail.com>
*Sent:* Wednesday, May 22, 2024 1:04 PM
*To:* Fischl, Bruce R.,PHD <bfis...@mgh.harvard.edu>
*Subject:* Re: Atlas Used in FreeSurfer for Segmentation of Fornix,
Corpus Callosum, Hippocampus
* External Email - Use Caution *
Dear sir,
It is not clear from these papers to me.
With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics (Biomedical Engineering Group)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552
On Wed, May 22, 2024, 8:19 PM Fischl, Bruce R.,PHD
<bfis...@mgh.harvard.edu> wrote:
Mostly these:
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://pubmed.ncbi.nlm.nih.gov/15501102/
<https://secure-web.cisco.com/1HR13_22Yz_9WpJjcigfRprjowpMV_nRs6XlxrY4Yb6j-evXZPGWuDST9cxl5hrxqDnY36OO-DWh-DHSjC9WOyIdWgTfSivwYdntG4mLrhEbocZQg77rCDLRrqkGdC4dWr1XAk8WpbIxARclMD5q1amLPtLgHzr62m0sYbJf__P7pnOZtoEuK1057w9V7mi6qkL5etQsJbwrUvACGhLjQuWkDaxxo9qqitpcmukocz-fAPaBs2D8pKIeiiU1d7egRwVS8Nkx8q9jk3JGCtUAPQYOhElJt4Jlt0aKAKsEsIPaLOQ-Cg-OS_XVvpyAb80SOw-iFHYeilK24sF1yxOvsKg/https%3A%2F%2Fpubmed.ncbi.nlm.nih.gov%2F15501102%2F>
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://doi.org/10.1016/S0896-6273(02)00569-X
<https://secure-web.cisco.com/1uYxJbJpTbAO8ILMWce1OXOAM2VlXwJ80ARMpic7_Y4CDCd-TX029cOcV76RNwmJ1nX4ausAz1tjUF9_GxGxyGRCGgqgXBMiYXeLT7ZmxBcjHuOxap7AgRk-pC7cxm3aJTC4ZTj2M2hn-AX4UOibz9tM2KWaoWRHc6PmlqHukLdRoIj4Fd3IvbvmddW8OTAMAJvENkfreybAHGhjav3ERNfMCAe1MQIhc9H96lfgpLgC137ztsnIJvZHYAiSNFtc5a3gPsCCbuMHfMj4WU3_KUBmE2i0VtIdg_slM5HAyiVam1S2U3u_NEoSuiNC12r54hcfwryLRIZg9jDnyjvXnlw/https%3A%2F%2Fdoi.org%2F10.1016%2FS0896-6273%2802%2900569-X>
cheers
Bruce
*From:*Ahsan Ali <ahsan889...@gmail.com>
*Sent:* Wednesday, May 22, 2024 4:31 AM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>;
Huang, Yujing <yhuan...@mgh.harvard.edu>; Fischl, Bruce R.,PHD
<bfis...@mgh.harvard.edu>
*Subject:* Atlas Used in FreeSurfer for Segmentation of Fornix,
Corpus Callosum, Hippocampus
* External Email - Use Caution *
Dear FreeSurfer Team,
After reviewing the literature, I have a question: which atlases
are used in the segmentation of the fornix, corpus callosum, and
hippocampus from magnetic resonance images using FreeSurfer? This
is a significant question for me, and I would appreciate a clear
and concise answer. Please provide some relevant references.
With Regards
Ahsan
---------------------------------------------
Ahsan Ali
Ph.D Scholar
Department of Applied Mechanics and Biomedical Engineering (AMBE)
Indian Institute of Technology Madras
Chennai-600036, Tamil Nadu, INDIA
Mob.:- +91-8899605552
The information in this e-mail is intended only for the person to
whom it is addressed. If you believe this e-mail was sent to you
in error and the e-mail contains patient information, please
contact the Mass General Brigham Compliance HelpLine at
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1N0MvKNFIBgTBpwH0_fE4Erq9GYA9l1dAIs9zS_j_cM3I1KwHZcznT-QI28TzxWJddrW_hSqNx2BvLW6l0qUl2wdSd9vir5weE8NZ9e_Owb_7Twe_oj4zza3gH6I0TDwQaqVI3Epiuc9WgwpXO9mBBMDy8fFbW9Eq2feDGE-yUfV0VhzMWlejduzO_JLyxzAvq4wnjwLAyyTOYZOOqFCxfCl6GRUo3v0Ykaj9VTAVRHVmD_BAMic4-Th3yZ_-Z-72DvOzXbt5RSuTcizHS2eB7cYi4YJXfRIeokb-VjM_nnFw_DHJGvwWyZ8z_61qbv-T/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
.
The information in this e-mail is intended only for the person to whom
it is addressed. If you believe this e-mail was sent to you in error
and the e-mail contains patient information, please contact the Mass
General Brigham Compliance HelpLine at *MailScanner has detected a
possible fraud attempt from "secure-web.cisco.com" claiming to be*
https://www.massgeneralbrigham.org/complianceline
<https://secure-web.cisco.com/1OM4mcc50Qfe8k4W6OcHgaA943SBzfkdd7bNh8ZqMDtb9_jvuilZRW1dV7MlF5scCEeXVv8QQ278LnqqhoaSlRhSgv4-5LzZMq5hrd1bVpaFitwDoruFqqiM6aOS1l4Xa3jkj6p1-khEqDPxGMqRcD6Ey49IrdAXAp6YurpvRscxOQfSram7PnlPjtf5TwrZdjiyzyXiMajP4C4Lprj1dbV9Vmm-c452TpexgWjd_tZMmSXRXhK0AJsrClQQmGoo-IKNQj3fJc6V87HUt4YB-QZmZzmpx4GOdIIb-7lJzwcp0TxenxikM5p9_slsXKiVJQoY5xbSapkreoCsd45h2Sg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>
.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline
<https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
