Here on the FreeSurfer list, we don't know much about the FSL tools like
BIANCA. Why don't you post to the FSL group?
On 6/12/2024 2:51 PM, CRISTIAN MOJICA wrote:
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Hello,
I will be running BIANCA in FSL after some quality control with the
requisite files to be listed in the Masterfile. I am examining my
skull-strip files (in FLAIR space), and most skull strips still have
some dura or black space occupied by CSF leftover. How sensitive is
BIANCA to some leftover non-cortical material, or is anyone aware of
an analysis that examines BIANCA's output as a function of
thoroughness of skull strip, or (on the Freesurfer side) have
suggestions for gcut or wsthresh parameters that are good for BIANCA?
The skull strip was done in Freesurfer's recon-all process, then the
resulting brainmask was registered into FLAIR space with FSL. Thanks
in advance!
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