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Sorry for the oversight
Thank you,
Best Wishes.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu>
Sent: Monday, June 24, 2024 9:52 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Calculating intensity of Individual voxel
I don't think she was responding to your question but rather to that of Ernest
On 6/21/2024 1:23 PM, Gaurav Ambwani wrote:
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Dear Yujing,
I don't think that this was my question. Here are the contents of what I sent
in my previous email:
I took a 1mm T1 MRI of the MNI152 skull stripped it using HD brain extraction
tool in 3D slicer, and then I registered it in fsl to a skull stripped version
of a T1 weighted image of a Stroke patient (which I got from Openneuro).
The purpose of doing this is to, get the aseg.mgz file and overlay that onto
the MRI of the stroke patient.
Previously I have taken the T1 1mm MNI image and received an aseg.mgz file
which I have overlayed onto my MNI registered T1 weighted stroke MRI and that
worked perfectly. However, This time I have taken the T1 1mm MNI image
registered that to my stroke T1 MRI, and the registered image hasn't gone
through freesurfer.
I have attached the recon-all.log file in this email.
Freesurfer version: freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460
Uname -a: Linux DESKTOP-HV9KQQ6 5.10.16.3-microsoft-standard-WSL2 #1 SMP Fri
Apr 2 22:23:49 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Distributor ID: Ubuntu
Description: Ubuntu 22.04.4 LTS
Release: 22.04
Codename: jammy
I am using a WSL in windows 11 (64 bit)
Thank you,
Best Wishes,
Gaurav Ambwani.
________________________________
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
on behalf of Huang, Yujing
<yhuan...@mgh.harvard.edu><mailto:yhuan...@mgh.harvard.edu>
Sent: Friday, June 21, 2024 7:46 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Calculating intensity of Individual voxel
‘mri_info vol.mgz --voxel c r s’ will print the voxel value from col row slice
of all frames.
Best,
Yujing
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
On Behalf Of ERNEST KISSI
Sent: Friday, June 21, 2024 5:16 AM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Calculating intensity of Individual voxel
External Email - Use Caution
Hi, freesurfer team
Is there a way to calculate the intensity of a voxel.Let say, I have a voxel
with coordinate 20, 30 and 34 and I wanna know the intensity of it. Can it be
done in freesurfer?
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