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________________________________ From: fsbuild <fsbu...@contbay.com> Sent: Tuesday, July 2, 2024 11:23 AM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] freesurfer as module My understanding is that it is up to the sysadmins who run a cluster to choose how to present and configure the apps they host whether it be thru modules, spack, or other tools. We don't track how cluster admins do that, but you could ask the helpdesk for the cluster you are going to use (which presumably lists there is some version of freesurfer already available on the cluster). Most have online documentation stating how to run their apps. I have used Freesurfer in the past on the SDSC cluster, and according to their web pages, they do use modules, https://www.sdsc.edu/support/user_guides/expanse.html#software<https://urldefense.com/v3/__https://www.sdsc.edu/support/user_guides/expanse.html*software__;Iw!!LLK065n_VXAQ!i8eI_xLf4NqDtDwYI2Uw2yQjD7c_8Bt8NQbe7dPkJ44_lE40FtfwgmfyFUgmpYMJFwSJU09dQzDSM3xHJ4Xs$> - R. On 7/1/24 14:55, Dong, Yilei (yid...@health.ucsd.edu) wrote Hi Freesurfer Developers, If Freesurfer is available as a module on a computer cluster, is it still necessary to source/configure the freesurfer module in a .bashrc script on Linux? Sincerely, Yilei _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer<https://urldefense.com/v3/__https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer__;!!LLK065n_VXAQ!i8eI_xLf4NqDtDwYI2Uw2yQjD7c_8Bt8NQbe7dPkJ44_lE40FtfwgmfyFUgmpYMJFwSJU09dQzDSM1qZpuEs$> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline<https://urldefense.com/v3/__https://www.massgeneralbrigham.org/complianceline__;!!LLK065n_VXAQ!i8eI_xLf4NqDtDwYI2Uw2yQjD7c_8Bt8NQbe7dPkJ44_lE40FtfwgmfyFUgmpYMJFwSJU09dQzDSMyZ342yI$> <https://www.massgeneralbrigham.org/complianceline><https://urldefense.com/v3/__https://www.massgeneralbrigham.org/complianceline*3E__;JQ!!LLK065n_VXAQ!i8eI_xLf4NqDtDwYI2Uw2yQjD7c_8Bt8NQbe7dPkJ44_lE40FtfwgmfyFUgmpYMJFwSJU09dQzDSM-56NWT6$> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
