External Email - Use Caution Hello there!
I'm hoping that someone can resolve this issue which I'm having. To me it seems that the pipeline is looking for ../surf/autodet.gw.stats.lh.dat, and I can confirm that it does not exist. Is there a quick solution? Everything in recon-all was functioning without error up to this point. The error is as follows: mri_vol2vol done #-------------------------------------------- #@# c2hWhiteSurfs lh Thu Jul 4 23:07:31 EDT 2024 cd /project/6001995/Shmuel_Mendola/data/MGH/HCPNaming/control/05_scan1/T1w/05/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg rawavg.aseg.presurf.mgz --wm rawavg.wm.mgz --invol rawavg.brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc.rawavg --o ../surf/lh.white.rawavg --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-wmsa --rip-surf ../surf/lh.white.preaparc.rawavg --aparc ../label/lh.aparc.annot ERROR: reading ../surf/autodet.gw.stats.lh.dat ERROR: Linux bc11246.int.ets1.calculquebec.ca 4.18.0-513.24.1.el8_9.x86_64 #1 SMP Thu Apr 4 18:13:02 UTC 2024 x86_64 GNU/Linux recon-all -s 05 exited with ERRORS at Thu Jul 4 23:07:32 EDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting Yours truly, Austin Cooper ​BEng - University of Guelph PBD - Cognitive Science - Carleton University PhD Candidate - Neuroscience - McGill University
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.